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mclust
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intra-cluster silhouette width
mclust
silhouette
fcp
6.7 years ago
Seymoo
• 0
0
votes
0
replies
1.5k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
8.4 years ago
anara92
• 0
0
votes
0
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1.3k
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Running Mclust package in R, using maximum a posteriori (MAP)
r
mclust
clustering
8.4 years ago
mabdulsa
• 0
0
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3
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2.6k
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Prior Control with Mclust package
R
mclust
clustering
updated 8.4 years ago by
Aedin Culhane
▴ 510 • written 8.4 years ago by
mabdulsa
• 0
2
votes
4
replies
4.6k
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Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
9.3 years ago
svlachavas
▴ 830
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Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …
Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
James W. MacDonald
67k
Check the help page for `KEGGFrame`. Your columns are out of order.
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…
Votes
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
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