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mclust
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1.5k
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intra-cluster silhouette width
mclust
silhouette
fcp
7.0 years ago
Seymoo
• 0
0
votes
0
replies
1.6k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
8.6 years ago
anara92
• 0
0
votes
0
replies
1.4k
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Running Mclust package in R, using maximum a posteriori (MAP)
r
mclust
clustering
8.7 years ago
mabdulsa
• 0
0
votes
3
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2.7k
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Prior Control with Mclust package
R
mclust
clustering
updated 8.7 years ago by
Aedin Culhane
▴ 510 • written 8.7 years ago by
mabdulsa
• 0
2
votes
4
replies
4.7k
views
Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
9.6 years ago
svlachavas
▴ 840
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Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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