Bioconductor Cluster

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geneexp pheatmap heatmaps cluster

updated 7 months ago by James W. MacDonald 67k • written 7 months ago by pehove2385 • 0

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715

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clusterProfiler cluster

8 months ago Yael • 0

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4.5k

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Network cluster WGCNA RNASeq

updated 18 months ago by James W. MacDonald 67k • written 18 months ago by chiwut.wong • 0

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cluster clusterProfiler KEGG

21 months ago • updated 20 months ago ruba-mahmoud • 0

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cluster OrgDb clusterProfiler

written 2.2 years ago by Chruut • 0

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815

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cluster qpcr qpcrNorm clusterProfiler HTqPCR

2.2 years ago Javier • 0

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2.1k

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scran Clustering SingleCellExperiment annotate cluster

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by achoppe ▴ 10

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973

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RNASeq Clustering cluster WGCNA

2.8 years ago chiwut.wong • 0

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1.7k

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biomaRt R cluster

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by camerond • 0

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SingleCellExperiment cluster identities sce

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by reinepapillon • 0

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876

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TCseq microwarray cluster counts normalization

5.5 years ago bioyas ▴ 10

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2.3k

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cluster mfuzz gene names

updated 8.8 years ago by Assa Yeroslaviz ★ 1.5k • written 8.8 years ago by thomas.dobrenel • 0

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quasr parallel cluster

9.0 years ago rna seq ▴ 90

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cluster

9.0 years ago niavarani ▴ 10

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cluster mclust limma clusplot kmeans

9.5 years ago svlachavas ▴ 840

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3.3k

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rnbeads gs ghostscript shared libraries cluster

9.5 years ago bmreilly • 0

16 results • Page 1 of 1

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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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