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2.9k
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How can I create a mean ROC curve for multiple plotted ROC curves, R
R
ROC
mean
plot
multiple roc curves
updated 5.6 years ago by
chris86
▴ 420 • written 5.6 years ago by
sap940
• 0
0
votes
1
reply
1.2k
views
mean and SD in output of Limma for differential-gene-expression
limma
mean
sd
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
mheydarpour
▴ 10
0
votes
1
reply
760
views
How to take mean from specific column
Mean
R
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
kritikamish99
▴ 10
5
votes
5
replies
1.8k
views
DESeq2 incorrect basemean
deseq2
mean
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
asd
• 0
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Christian Ruckert
▴ 170
1
vote
1
reply
832
views
mean and standard deviation at each point value of a list of matrices
mean
standard deviation
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
vinod.acear
▴ 50
6 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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