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Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 15 months ago by
shepherl
4.2k • written 15 months ago by
Sadman
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Spam:
How do professional SEO services enhance user experience on my website?
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15 months ago
Steven
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How to search Pubmed Central or other fulltext literature base using regex?
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Bioconductor
16 months ago
Abiologist
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News:
Stop mirror service
metaMSdata
updated 16 months ago by
shepherl
4.2k • written 16 months ago by
khonda
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Can log2cpm be used for proteomics data normalization?
metaMSdata
17 months ago
Daniel
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
18 months ago
shuwangxinze1996
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Doing comparison of RNA-seq data using EdgeR
metaMSdata
edgeR
updated 19 months ago by
Gordon Smyth
53k • written 19 months ago by
Faisal
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747
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Visium RNA
metaMSdata
written 19 months ago by
Karlison
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How to control RAN-seq samples from different libraries
metaMSdata
updated 21 months ago by
James W. MacDonald
68k • written 21 months ago by
jianyang.liu
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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