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metamsdata
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Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 16 months ago by
shepherl
4.2k • written 16 months ago by
Sadman
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Spam:
How do professional SEO services enhance user experience on my website?
metaMSdata
17 months ago
Steven
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999
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata
Bioconductor
17 months ago
Abiologist
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News:
Stop mirror service
metaMSdata
updated 18 months ago by
shepherl
4.2k • written 18 months ago by
khonda
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Can log2cpm be used for proteomics data normalization?
metaMSdata
19 months ago
Daniel
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916
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
19 months ago
shuwangxinze1996
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1.3k
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Doing comparison of RNA-seq data using EdgeR
metaMSdata
edgeR
updated 20 months ago by
Gordon Smyth
53k • written 20 months ago by
Faisal
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767
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Visium RNA
metaMSdata
written 20 months ago by
Karlison
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How to control RAN-seq samples from different libraries
metaMSdata
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
jianyang.liu
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Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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