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Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 17 months ago by 4.3k • written 18 months ago by • 0
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Spam: How do professional SEO services enhance user experience on my website?
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18 months ago Steven 0
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How to search Pubmed Central or other fulltext literature base using regex?
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18 months ago Abiologist • 0
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News: Stop mirror service
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updated 19 months ago by 4.3k • written 19 months ago by • 0
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Can log2cpm be used for proteomics data normalization?
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20 months ago Daniel • 0
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
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21 months ago shuwangxinze1996 • 0
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Doing comparison of RNA-seq data using EdgeR
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updated 21 months ago by 53k • written 21 months ago by • 0
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Visium RNA
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written 22 months ago by • 0
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How to control RAN-seq samples from different libraries
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updated 23 months ago by 68k • written 23 months ago by • 0
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Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
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Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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