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Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
•
0
Thank you, Dr. Smyth. So it doesn't make sense to form a contrast for the intercept model, does it?
Answer: LogFC values in edgeR - w/wo intercept
by
Gordon Smyth
45k
edgeR gives identical results whether you use an intercept or not. The two approaches between the intercept model and the no-intercept (gro…
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Jiping Wang
▴
70
Any help on why `pcoverageByTranscript` generate such errors? thanks.
Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
Hervé Pagès
15k
And also please don't ignore these warnings:
1: package ‘GenomicFeatures’ was built under R version 4.1.1
2: package ‘BiocGenerics’ was b…
Comment: broken chain import in liftOver
by
Marcel Ramos
570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached:
```r
library(AnnotationHub)
query(ah <- Annot…
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