Bioconductor MiRNAData

Showing : miRNAData • reset

0

votes

1

reply

781

views

mirTarRnaSeq miRNAData

updated 2.1 years ago by Gordon Smyth 53k • written 2.1 years ago by nawaz.u.toyama • 0

0

votes

1

reply

915

views

DESeq2 GEO miRNAData

updated 2.3 years ago by ATpoint ★ 4.9k • written 2.3 years ago by ashisaanz • 0

2

votes

2

replies

1.6k

views

miRNAData miRNA DifferentialExpression edgeR

3.4 years ago Sarah • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

Awards • All

Popular Question to Assa Yeroslaviz ★ 1.5k