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Comment: DESeq2 - Comparing Comparisons
by
James W. MacDonald
67k
Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…
Comment: DESeq2 - Comparing Comparisons
by
sk
• 0
Hi James, Thank you for your response! Quick follow-up; if I structure my contrast as below, will it perform (A-B) - (C-D)? res_diff <…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
txema.heredia
• 0
You could check the reply I got to a similar issue here: https://support.bioconductor.org/p/9160134/ In short, DESeq2 uses by default `ind…
Comment: EuroBioC2024 abstract submission is open!
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Jessica
• 0
Mixing it up with a bunch of categories like short talks, presentation packs, posters, and contribution sessions makes sharing research and…
Comment: Can we get beta values with DMRcate package
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Melisa Tecik
• 0
When I updated, the problem was solved. I used the getCollapsedBetas function. My EPIC array data is the original one, so I'll stick with…
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Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
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