Bioconductor MicrobiomeDataSets

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microbiomeDataSets differential-abundance

8 months ago 샤니쿠마리 • 0

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Metagenomics metagenomeSeq microbiome phyloseq microbiomeDataSets

21 months ago Mohamed ▴ 30

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microbiomeDataSets Microbiome

2.3 years ago Elif • 0

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Comment: FlowSOM is unable to create Output by EvangelinePope • 0

I will remember it, Thank you so much for sharing.

Answer: Limma suqeezeVar by Gordon Smyth 52k

I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…

Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k

Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…

Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Comment: parameters of filterByExpr

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