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mlinterfaces
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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.0k
views
How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces
MLInterfaces
updated 11.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.1 years ago by
Guest User
★ 13k
0
votes
0
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1.5k
views
Classification in Mass Spectrometry Data
Microarray
Classification
Cancer
Ovarian
PROcess
MLInterfaces
ASSIGN
Microarray
Cancer
11.5 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
1.2k
views
xvalSpec('NOTEST') problem
MLInterfaces
MLInterfaces
updated 12.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.0 years ago by
Gustavo Fernández Bayón
▴ 440
0
votes
1
reply
1.1k
views
Need help with MLearn in MLInterfaces package
Clustering
MLInterfaces
Clustering
MLInterfaces
updated 15.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.2 years ago by
Tul Gan
▴ 10
0
votes
0
replies
1.2k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH
SNP
Genetics
Annotation
GO
Visualization
affy
limma
aCGH
MLInterfaces
Category
SNP
16.3 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
782
views
stat.diag.daB MLInterfaces
Classification
MLInterfaces
Classification
MLInterfaces
17.5 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
968
views
Error in xval: No Direct or Inherited Method for this call
Biobase
MLInterfaces
Biobase
MLInterfaces
17.6 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
1.2k
views
Error in xval: No Direct or Inherited Method for this call
Survival
Biobase
genefilter
MLInterfaces
Survival
Biobase
genefilter
MLInterfaces
17.6 years ago
Martin Morgan
25k
0
votes
3
replies
1.1k
views
xval in MLInterfaces package
MLInterfaces
MLInterfaces
updated 17.9 years ago by
Martin Morgan
25k • written 17.9 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.0k
views
MLInterfaces
GeneSpring
MLInterfaces
GeneSpring
MLInterfaces
updated 18.2 years ago by
Stephen Henderson
★ 1.0k • written 18.2 years ago by
Qi.Zhang@astrazeneca.com
▴ 60
11 results • Page
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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