Bioconductor Multi-confounders

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deseq2 design matrix multi-confounders linear models rna-seq

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by mohamedrefaat.1.1992 • 0

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Answer: Unable to create venndiagram using VennDiagram 1.5.1 package by kesha • 0

<a href=https://vavadacasinox.com/>vavadacasinox.com</a>

Comment: How to convert .raw data for use in xcms by a2a2asawhaa • 0

try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

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