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Keep getting NaN Values in GAGE analysis of KEGG pathways
KEGG
GAGE
NaN
R
DESeq2
updated 17 months ago by
Rob
• 0 • written 6.0 years ago by
owen.donohoe
• 0
0
votes
2
replies
874
views
ape::dnds produces nan value
R
ape
dnds
nan
nanotubes
22 months ago
Working
• 0
3
votes
2
replies
1.1k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
3.3 years ago
choijamts
• 0
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Comment: pathview error "negative length vectors are not allowed
by
Evan
• 0
Same for N-glycan metabolism-- fails with `same.layer = TRUE` , smudges and comet-like shading with `same.layer = FALSE`, crowded web with …
Comment: How to conduct maSigPro analysis with only one condition?
by
James W. MacDonald
67k
Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…
Comment: How to conduct maSigPro analysis with only one condition?
by
James W. MacDonald
67k
Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
by
James W. MacDonald
67k
You have installed the packages you wanted: ``` package BiocVersion successfully unpacked and MD5 sums checked package LEA success…
Comment: QSEA- Extraction of Normalized methylation across the samples
by
celiaruby127
• 0
If you need specific counts for defined regions or windows, you may want to explore other functions or slots within the QSEA object that co…
Votes
Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat
Answer: How to conduct maSigPro analysis with only one condition?
Answer: How to conduct maSigPro analysis with only one condition?
Answer: Removing Effect of Covariate in Only a Subset of Samples in a Model Containing A
Answer: Importing data into the DESeq2 pipeline using tximport
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