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NanoStringDiff
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0
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38
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
1 day ago
pg45863
• 0
0
votes
2
replies
84
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
7 days ago • updated 6 days ago
pg45863
• 0
0
votes
1
reply
160
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 3 months ago by
James W. MacDonald
62k • written 3 months ago by
Aleksandra
• 0
0
votes
2
replies
225
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 5 months ago by
James W. MacDonald
62k • written 5 months ago by
Paraskevi
• 0
0
votes
0
replies
368
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
17 months ago
sanrie10
• 0
5
votes
7
replies
1.0k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 20 months ago by
James W. MacDonald
62k • written 21 months ago by
reberya
• 0
3
votes
2
replies
664
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
23 months ago
choijamts
• 0
2
votes
4
replies
1.3k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 2.0 years ago by
anastazie.d
▴ 20 • written 3.8 years ago by
lim6432
▴ 50
0
votes
0
replies
421
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
2.2 years ago
YM
• 0
1
vote
1
reply
617
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 2.6 years ago by
Laurent Gatto
1.6k • written 2.6 years ago by
Pedro
▴ 10
1
vote
7
replies
669
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
3.4 years ago
stephen.pollo
• 0
0
votes
2
replies
535
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 3.8 years ago by
James W. MacDonald
62k • written 3.8 years ago by
Guillaume Robert
• 0
2
votes
2
replies
1.0k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 4.0 years ago by
James W. MacDonald
62k • written 4.0 years ago by
noelleenright
▴ 10
1
vote
6
replies
1.4k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 5.0 years ago by
James W. MacDonald
62k • written 5.0 years ago by
casey.rimland
▴ 150
0
votes
0
replies
1.0k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
5.9 years ago
c.kohler
• 0
15 results • Page
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Comment: Proteomics data with NA values
by
ATpoint
★ 2.8k
NAs are common in proteomics data and a common strategy is to impute them, see for example the `DEP` package here at Bioconductor which dis…
Answer: Proteomics data with NA values
by
Laurent Gatto
1.6k
- First, you need to assess how many missing values you have. - I would recommend not to impute your data by 0 (or any arbitrary small …
Answer: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
Sorry, I am not able to follow your question. I don't understand the design of your experiment -- you would need to provide the targets fra…
Answer: European Bioconductor Conference 2023 planning
by
noteminnow
• 0
Great. I will join it. [baldi's basics][1] [1]: https://baldisbasics.io
Comment: BiocGenerics binary is outdated for macOS ARM
by
Michael Steinbaugh
▴ 90
Awesome thanks, for reference here's the lock issue: ``` ############################################################################## ##…
Votes
Visualization of negative log CPM values
A: Difference between heatmap using Euclidian distance and Poisson distance
Comment: BiocGenerics binary is outdated for macOS ARM
flowCore: using read.FCS with which.lines is not time efficient?
Comment: BiocGenerics binary is outdated for macOS ARM
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