Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
NanoStringDiff
•
reset
0
votes
0
replies
1.1k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
14 months ago
pg45863
▴ 10
0
votes
2
replies
1.0k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
14 months ago
pg45863
▴ 10
0
votes
1
reply
705
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 18 months ago by
James W. MacDonald
66k • written 18 months ago by
Aleksandra
• 0
0
votes
2
replies
569
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 19 months ago by
James W. MacDonald
66k • written 19 months ago by
Paraskevi
• 0
0
votes
0
replies
615
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
2.6 years ago
sanrie10
• 0
5
votes
7
replies
1.6k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 2.9 years ago by
James W. MacDonald
66k • written 2.9 years ago by
reberya
• 0
3
votes
2
replies
1.0k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
3.1 years ago
choijamts
• 0
3
votes
6
replies
2.0k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 8 months ago by
georgersmith
• 0 • written 5.0 years ago by
lim6432
▴ 50
0
votes
0
replies
717
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
3.4 years ago
YM
• 0
1
vote
1
reply
984
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 3.7 years ago by
Laurent Gatto
1.6k • written 3.7 years ago by
Pedro
▴ 10
1
vote
7
replies
1.2k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.5 years ago
stephen.pollo
• 0
0
votes
2
replies
931
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 4.9 years ago by
James W. MacDonald
66k • written 4.9 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.5k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 6 months ago by
pjanas
• 0 • written 5.2 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.1k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
casey.rimland
▴ 160
0
votes
0
replies
1.4k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
7.0 years ago
c.kohler
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
San Diego,
4 minutes ago
France,
6 minutes ago
United States,
21 minutes ago
United States,
29 minutes ago
WEHI, Melbourne, Australia,
48 minutes ago
Traffic: 686 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6