Showing : narrowpeaks • reset
8
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.3 years ago by 51k • written 9.3 years ago by ▴ 140
5
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3
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Rsubread counting peaks ATACseq
Rsubread atac-seq narrowpeaks featurecounts
updated 6.8 years ago by ★ 3.6k • written 6.8 years ago by ▴ 90
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DiffBind error loading dba
GO DiffBind NarrowPeaks GO DiffBind NarrowPeaks
10.6 years ago Rory Stark ★ 5.2k
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996
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narrowpeaks profMatrix rangeval error
ChIPSeq chipseq NarrowPeaks ChIPSeq chipseq NarrowPeaks
10.4 years ago Robert Chase ▴ 10
4 results • Page 1 of 1
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Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k
Thanks James! I indeed missed the obvious... all clear now!
Comment: How to read OSCA book? by zr • 0
Got it, that had really confused me a bit, thank you for your help!
Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl by James W. MacDonald 67k
Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.
Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl by bioinformata • 0
Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k
Hi Guido, It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …
Votes
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Answer: How to read OSCA book?
Answer: How to read OSCA book?
DESeq2 design and contrasts with 2 drug-treated and one control group
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
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