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Ramon Diaz-Uriarte
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Malard, Joel M
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Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
•
0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
Comment: GAGE kegg.gsets() self-signed certificate error
by
Lucas
•
0
Hello,
I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification.
I used the following code to …
Comment: Clarification on GOALL / GO2ALLORFs mapping
by
DavideSant
•
0
Thank you for your answer James.
I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
by
Michael Love
43k
And to add to this: when you put a generic package (e.g. DESeq2) as a tag, it actually emails the maintainer.
Answer: Using TPM from tximport of Salmon output for singscore
by
Michael Love
43k
TPM is fine, I've also sometimes used TPM with some robust column scaling, e.g.:
```
sf <- DESeq2::estimateSizeFactorsForMatrix(txi$abu…
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