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nested
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edgeR: estimating dispersion for nested designs
edger
nested
estimatedispersions
9.3 years ago
Mauve
• 0
1
vote
1
reply
2.5k
views
EdgeR:Calculating differential expression within/between groups in nested designs
edger
nested
design matrix
differential expression
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
Mauve
• 0
4
votes
7
replies
1.2k
views
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR
nested
glm
glmQLFit
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
jcalis
▴ 10
0
votes
3
replies
1.0k
views
DESeq2 - nested samples (individuals) - time course - conditions
deseq2
nested
de
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
gaio.transposon
• 0
1
vote
2
replies
790
views
Correct DESeq2 interaction design and results with paired and nested data
deseq2
Paired
Nested
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
julia.chariker
▴ 10
0
votes
3
replies
1.0k
views
Nested design- phyloseq_to_deseq
deseq2
Phyloseq
Nested
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
mpuli011
• 0
0
votes
3
replies
1.1k
views
Is it possible to specify random nested factor in DEseq2?
nested
DESeq2
updated 2.3 years ago by
Michael Love
42k • written 2.4 years ago by
yampolsk
• 0
0
votes
1
reply
426
views
deseq2 nested multifactorial analysis
DESeq2
multifactorial
nested
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
jd
• 0
8 results • Page
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Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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