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newwave
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Statistical test
NewWave
written 4 months ago by
mario
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 4 months ago by
shepherl
3.9k • written 4 months ago by
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error running exp2grn
NewWave
updated 7 months ago by
Fabricio Almeida-Silva
▴ 40 • written 8 months ago by
adriana
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
7 months ago
Kilian
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave
hgu133a2.db
updated 7 months ago by
ATpoint
★ 4.1k • written 7 months ago by
roy23032
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Spam:
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mgu74bv2cdf
NewWave
hgu133a2.db
10 months ago
roma
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Spam:
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mgu74bv2cdf
NewWave
hgu133a2.db
10 months ago
roma
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Extracting DEG from topTags
NewWave
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
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How to use txtimport and do differential expression
NewWave
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
SuASNAVASCH
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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