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nnnorm
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How does one deal with spatial effects detected on single channel microarrays?
Microarray
Normalization
hu6800
affy
gcrma
marray
nnNorm
Harshlight
Microarray
hu6800
10.6 years ago
Scott Robinson
▴ 130
0
votes
0
replies
828
views
Bug in maNormNN
Microarray
Normalization
GO
Visualization
Network
nnNorm
Microarray
Normalization
GO
18.5 years ago
Tarca, Adi
▴ 570
0
votes
6
replies
1.6k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray
Normalization
affy
marray
nnNorm
Microarray
Normalization
affy
marray
nnNorm
updated 10.7 years ago by
cstrato
★ 3.9k • written 10.7 years ago by
Guest User
★ 13k
0
votes
1
reply
967
views
nnNorm loading problem
nnNorm
nnNorm
updated 17.7 years ago by
Seth Falcon
★ 7.4k • written 17.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
0
replies
673
views
need a neural network package for microarray data
Normalization
nnNorm
Normalization
nnNorm
18.4 years ago
Tarca, Adi
▴ 570
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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