Showing : ontotools • reset
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Loading ontologies from OBO foundry?
graph ontoTools graph ontoTools
updated 15.4 years ago by 6.7k • written 15.4 years ago by ▴ 80
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About goTools and multiple chips
GO moe430b probe ontoTools GO moe430b probe ontoTools
updated 20.9 years ago by ▴ 500 • written 20.9 years ago by ▴ 40
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ontoTools and Rgraphviz
Rgraphviz ontoTools Rgraphviz ontoTools
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by ▴ 50
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956
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export colored nodes using toDot in ontoTools
ontoTools ontoTools
updated 21.3 years ago by 6.7k • written 21.3 years ago by ▴ 50
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Error when calculating coverageMat in ontoTools 1.2.1
GO ontoTools GO ontoTools
21.8 years ago Rohan BH Williams ▴ 10
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Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
21.9 years ago Elisabetta Manduchi ▴ 160
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question on hgu95 metadata and ontoTools
ontoTools ontoTools
updated 22.0 years ago by ★ 5.5k • written 22.0 years ago by ▴ 160
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1.0k
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problem loading ontoTools
ontoTools ontoTools
22.1 years ago Nicholas Lewin-Koh ▴ 430
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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