Showing : ontotools • reset
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Loading ontologies from OBO foundry?
graph ontoTools graph ontoTools
updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 80
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About goTools and multiple chips
GO moe430b probe ontoTools GO moe430b probe ontoTools
updated 20.9 years ago by ▴ 500 • written 20.9 years ago by ▴ 40
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ontoTools and Rgraphviz
Rgraphviz ontoTools Rgraphviz ontoTools
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ▴ 50
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export colored nodes using toDot in ontoTools
ontoTools ontoTools
updated 21.4 years ago by 6.7k • written 21.4 years ago by ▴ 50
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Error when calculating coverageMat in ontoTools 1.2.1
GO ontoTools GO ontoTools
21.9 years ago Rohan BH Williams ▴ 10
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Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
22.0 years ago Elisabetta Manduchi ▴ 160
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question on hgu95 metadata and ontoTools
ontoTools ontoTools
updated 22.1 years ago by ★ 5.5k • written 22.1 years ago by ▴ 160
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problem loading ontoTools
ontoTools ontoTools
22.2 years ago Nicholas Lewin-Koh ▴ 430
8 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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