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openprimer
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9
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2.1k
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How to load fasta file with openPrimeR?
openPrimeR
written 3.8 years ago by
marongiu.luigi
• 0
0
votes
1
reply
472
views
How to save primers in a local file with openPrimeR
openPrimeR
updated 21 months ago by
Basti
▴ 780 • written 21 months ago by
Santiago Edilberto
• 0
0
votes
2
replies
879
views
How to save primers in local file in openPrimeR
openPrimeR
updated 21 months ago by
Santiago Edilberto
• 0 • written 3.8 years ago by
marongiu.luigi
• 0
0
votes
4
replies
847
views
Load templates from openPrimeR
PCRmultiplex
openPrimeR
22 months ago • updated 21 months ago
Santiago Edilberto
• 0
0
votes
1
reply
807
views
openPrimer check_constraints cannot compute Tm
openPrimeR
updated 2.6 years ago by
matthias-doering
▴ 40 • written 2.6 years ago by
wnussbau
• 0
0
votes
1
reply
754
views
openPrimeR does not recognize external MELTING installation
openPrimeR
updated 3.4 years ago by
matthias-doering
▴ 40 • written 3.4 years ago by
benedikt.kirchner
• 0
0
votes
1
reply
699
views
How to increase the number of primer set output in openPrimeR
openPrimeR
updated 3.4 years ago by
matthias-doering
▴ 40 • written 3.8 years ago by
marongiu.luigi
• 0
1
vote
3
replies
1.2k
views
How to define settings for design primers with openPrimeR?
openPrimeR
3.8 years ago
marongiu.luigi
• 0
0
votes
0
replies
788
views
openPrimeR can't find external dependencies
openPrimeRui
openPrimeR
5.5 years ago
Vinicius Henrique da Silva
▴ 40
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Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
by
Michael Love
43k
I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Gordon Smyth
52k
The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…
Answer: Feature Counts -R XS Read Assignment Tag
by
Gordon Smyth
52k
No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…
Comment: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …
Comment: DESeq2 - Comparing Comparisons
by
James W. MacDonald
67k
Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…
Votes
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
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