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How can I mention separate creator and correspondence in a package?
package description
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 20
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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by Nicholas • 0
Got it, so using the GTF directly rather than any of the annotation packages will yield more accurate results than any of the packages? I g…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k
I agree that it's difficult to match an `EnsDb` object to the build, but I think that is orthogonal to OP's issue, which is mapping transcr…
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10
I see. Thank you for your advice! In my case per James' suggestions, I redesigned the model to `~ DonorID + Subset + Conditions` as Date_…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by ATpoint ★ 4.6k
> that you should stick with whatever IDs you started with, Meaning, you got your fasta file for the kallisto index from somewhere, e.g. …
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k
Think of two separate paths in DESeq2: 1) visualization/EDA and 2) testing. For (1) you use vst(), removeBatchEffect(), etc. The design is…
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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
Why did PCA plots look exactly the same after adjusting for batch covariate in DESeq2 design?
A: Trajectory analysis for single cell sequencing
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Annotation with org.Hs.eg.db Genome Build 38
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