Bioconductor Paired end

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Rsubread paired end featureCounts

updated 4.4 years ago by Wei Shi ★ 3.5k • written 4.4 years ago by hauken_heyken ▴ 80

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Comment: Unlog transformed data in DESeq2 by Gordon Smyth 48k

The RUVIII people themselves use limma ( https://doi.org/10.1093/nar/gkz433 ). But please, post your question as a question. That would be …

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Yes I see that. So, to expand, if strong grouping IS seen, then the ```~condition``` approach is not appropriate, as will likely lead to po…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

This seems a very odd response to what seemed to be a very reasonable question

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

I'm not using Chat GPT. I've been discussing at length this issue of having multiple samples derived from the same patients with many colle…

Comment: DESeq2 - groups with biological replicates from the same patient by Kevin Blighe 3.9k

No, it's more important to solve broader issues. >10 million children go hungry every day in the USA. Controlling for Type 1 error will not…

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Scholar to Assa Yeroslaviz ★ 1.5k