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pathview
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1.4k
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Doubts regarding Pathview
Annotation
pathview
Annotation
pathview
written 9.7 years ago by
Luo Weijun
★ 1.6k
0
votes
3
replies
1.1k
views
pathview error "negative length vectors are not allowed
pathview
kegg
KEGG
updated 6 months ago by
Benji Bromberg
▴ 20 • written 7 months ago by
Mauricio Diego
• 0
1
vote
4
replies
1.0k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview
KEGG
Oryza_sativa
10 months ago
Jiyoung Lee
• 0
0
votes
0
replies
507
views
SSL connect error in e.g. pathview from R version 4 in Windows 10
pathview
SSL
curl
9 months ago
Matthias
• 0
0
votes
1
reply
189
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 4 weeks ago by
Guido Hooiveld
★ 3.9k • written 5 weeks ago by
Julie
• 0
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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