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ATAC-seq: Sample size when pooling sample reads to call peaks
atac-seq
sample size
Peak
Normalize
6.5 years ago
jaime.alvarez.benayas
• 0
0
votes
6
replies
1.4k
views
min enrichment in peak calling with diffHiC?
diffhic
peak
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
hwick1
▴ 20
0
votes
2
replies
1.6k
views
How to take sample peak from each chromosome in peak bed files ?
r
chipseq
encode
peak
7.6 years ago
Jurat Shahidin
▴ 80
0
votes
1
reply
1.3k
views
DiffBind: Consensus peak score ?
diffbind
peak
chipseq
updated 8.1 years ago by
Rory Stark
★ 5.2k • written 8.1 years ago by
becavin.christophe
• 0
4 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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