Showing : sample size • reset
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DESeq2: Small treatment group, large control group
deseq2 sample size
updated 5.4 years ago by 41k • written 5.4 years ago by • 0
3
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6
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1.3k
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nbinomLRT function all cores usage
deseq2 nbinomLRT sample size biocparallel
updated 5.5 years ago by ▴ 950 • written 5.5 years ago by • 0
4
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5
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2.1k
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sample size determination in microarrays studies with limma analysis
limma sample size microarrays statistical power
6.1 years ago eleonoregravier ▴ 70
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1.6k
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ATAC-seq: Sample size when pooling sample reads to call peaks
atac-seq sample size Peak Normalize
6.3 years ago jaime.alvarez.benayas • 0
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9
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4.7k
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DESeq2 unequal sample sizes
deseq2 deseq sample size
6.6 years ago • updated 6.5 years ago MrHodor • 0
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3
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1.6k
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csaw: how does unequal sample size affect filtering filterWindows step
csaw differential binding analysis sample size independent filtering statistical power
updated 6.6 years ago by ★ 28k • written 6.6 years ago by • 0
4
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1
reply
1.8k
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Very low EdgeR Pvalues with very small sample size
edger pvalue sample size
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 40
0
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5
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2.2k
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 8.2 years ago by ▴ 20 • written 8.2 years ago by • 0
8
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17
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14k
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WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA Sample Size Outliers
updated 8.6 years ago by • 0 • written 9.2 years ago by ▴ 150
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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