Showing : phylogeny • reset
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How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r ggtree phylogeny
updated 18 months ago by ★ 1.2k • written 18 months ago by ▴ 10
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Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa phylogeny
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by • 0
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Comment: Macbook M1 install genefilter failed by Ryan • 0
Yes, this solution worked for me as well.
Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea by Rory Stark ★ 4.3k
Nothing too unusual, just a bug where in certain conditions the `Called` columns were being computed using the unmerged datasets. This onl…
Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k
I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…
Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k
You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…
Comment: deseq2 + filtering low counts with noiseq function by Michael Love 35k
Nothing especially concerning about nonparametric methods in my opinion, except that with very low sample size they lose sensitivity. E.g. …
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edgeR cpm() function with and without log2
edgeR cpm() function with and without log2
A: edgeR cpm() function with and without log2
A: edgeR cpm() function with and without log2
A: How to get all possible comparisons in DiffBind
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