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pics
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902
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W: unnormalised vs normalised distribution
Cancer
gcrma
PICS
Cancer
gcrma
PICS
17.9 years ago
Benjamin Otto
▴ 830
0
votes
0
replies
913
views
Hey sexy still here?
PICS
PICS
15.9 years ago
Karly Faith
▴ 10
0
votes
0
replies
850
views
PICS mm9 mappability map?
Cancer
PICS
Cancer
PICS
13.6 years ago
Hamid Bolouri
▴ 90
0
votes
2
replies
1.1k
views
PICS: vignette code outdated (use of GenomeData-object)
convert
PICS
convert
PICS
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Samuel Wuest
▴ 330
0
votes
1
reply
1.3k
views
help needed in namespace definition
GenomicRanges
PICS
GenomicRanges
PICS
updated 12.7 years ago by
Hervé Pagès
16k • written 12.7 years ago by
Frederic Fournier
▴ 10
0
votes
5
replies
1.1k
views
PICS
GO
PICS
GO
PICS
updated 12.5 years ago by
Arnaud Droit
▴ 20 • written 12.5 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
975
views
Regarding MotIv and PICS package install
PICS
PICS
updated 12.0 years ago by
Dan Tenenbaum
★ 8.2k • written 12.0 years ago by
Swaroopa Muppiri
▴ 20
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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