Bioconductor Pigengene

Showing : pigengene • reset

votes

307

views

Pigengene

written 12 months ago by Thomas • 0

votes

replies

1.7k

views

Pigengene

2.1 years ago kjngo ▴ 40

votes

replies

2.7k

views

Pigengene

2.1 years ago kjngo ▴ 40

votes

replies

2.1k

views

Pigengene

updated 7.1 years ago by Habil Zare ▴ 200 • written 7.1 years ago by rammohanshukla ▴ 10

votes

replies

2.0k

views

Pigengene WGCNA

updated 7.8 years ago by Habil Zare ▴ 200 • written 7.8 years ago by boting.m.ning • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180