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pigengene
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Questions about using training sets and WGCNA module eigengenes generated separately for Pigengene package
Pigengene
6 months ago • updated 5 months ago
kjngo
▴ 40
2
votes
7
replies
966
views
Errors with running learn.bn function and setting toCompact to TRUE in one.step.pigengene function in Pigengene package
Pigengene
6 months ago
kjngo
▴ 40
6
votes
5
replies
1.4k
views
Pigengene : BN network using consensus module
Pigengene
updated 5.5 years ago by
Habil Zare
▴ 200 • written 5.5 years ago by
rammohanshukla
▴ 10
3
votes
6
replies
1.4k
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Questions on Pigengene
Pigengene
WGCNA
updated 6.2 years ago by
Habil Zare
▴ 200 • written 6.2 years ago by
boting.m.ning
• 0
4 results • Page
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 220
Looks like `sgv_pred` does not have the expected format. Was it created or edited manually? I would always recommend creating objects with …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you:)
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you! But I apologize for cannot fully grasp your point. Do you mean that when the counts are high, rlogged matrix can represent the t…
Comment: Query regarding phyloseq object construct with QIIME output
by
Rosso
• 0
Constructing a phyloseq object from QIIME output involves several steps to integrate taxonomic abundance data, sample metadata, and phyloge…
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Votes
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
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