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PING PING

updated 13.4 years ago by Xuekui Zhang ▴ 20 • written 13.5 years ago by Lars Hennig ▴ 10

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Cancer PING Cancer PING

updated 14.1 years ago by Dan Tenenbaum ★ 8.2k • written 14.1 years ago by Philip Lijnzaad ▴ 160

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Cancer PING Cancer PING

updated 14.1 years ago by David Henderson ▴ 20 • written 14.1 years ago by Philip Lijnzaad ▴ 160

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Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA

updated 15.4 years ago by Ping Ma ▴ 10 • written 15.4 years ago by Hervé Pagès 16k

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miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING

updated 16.3 years ago by michael watson IAH-C ★ 3.4k • written 16.3 years ago by mauede@alice.it ▴ 870

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limma PING limma PING

22.4 years ago Gordon Smyth 53k

6 results • Page 1 of 1

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Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

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Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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