Bioconductor Ping

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PING PING

updated 13.6 years ago by Xuekui Zhang ▴ 20 • written 13.6 years ago by Lars Hennig ▴ 10

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Cancer PING Cancer PING

updated 14.2 years ago by Dan Tenenbaum ★ 8.2k • written 14.2 years ago by Philip Lijnzaad ▴ 160

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Cancer PING Cancer PING

updated 14.2 years ago by David Henderson ▴ 20 • written 14.2 years ago by Philip Lijnzaad ▴ 160

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1.6k

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Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA

updated 15.5 years ago by Ping Ma ▴ 10 • written 15.5 years ago by Hervé Pagès 16k

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miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING

updated 16.5 years ago by michael watson IAH-C ★ 3.4k • written 16.5 years ago by mauede@alice.it ▴ 870

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limma PING limma PING

22.5 years ago Gordon Smyth 53k

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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