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gsva plage differential expression gene set enrichment

4.4 years ago krassowski.michal ▴ 20

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

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Comment: Interpret plot from DiffBind

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