Showing : plage • reset
1
vote
1
reply
442
views
PLAGE method fails in GSVA if an overlap between gene sets and genes in expressions is less than two
gsva plage differential expression gene set enrichment
2.7 years ago krassowski.michal ▴ 10
1 result • Page 1 of 1
Recent ...
Replies
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
What happens when you do ``` library(DESeq2) ``` If it says something about genefilter, then just try to install genefilter, not DESeq2 a…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, I would assume that's the analysis demonstrated within user guide, example 4.1. If so, I have performed. Taking the …
Comment: Macbook M1 install genefilter failed by Alexandre • 0
Michael, Do you have perhaps R binary installed for Intel chips ? Mine is arm64.pkg. I read somehwhere the binary for Intel chips works f…
Comment: Macbook M1 install genefilter failed by Alexandre • 0
[n] stops the installation. I've tried to force since it is installed already and then I tried `none` as you said. > BiocManager::inst…
Votes
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Awards • All
Scholar to Rory Stark ★ 4.1k
Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
Teacher to Michael Love 34k
Locations • All
Republic of Ireland, 4 minutes ago
France, 11 minutes ago
United States, 13 minutes ago
United Kingdom, 35 minutes ago
Germany, 42 minutes ago
Traffic: 366 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6