Bioconductor Gene set enrichment

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gsva plage differential expression gene set enrichment

4.7 years ago krassowski.michal ▴ 20

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1.2k

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camera limma gene set analysis gene set enrichment

updated 4.9 years ago by Gordon Smyth 48k • written 4.9 years ago by emeline.perthame • 0

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929

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gene set analysis gene set enrichment limma

updated 5.0 years ago by Gordon Smyth 48k • written 5.0 years ago by jaynishshah • 0

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872

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gene set enrichment KEGG

updated 5.6 years ago by Lluís Revilla Sancho ▴ 720 • written 5.6 years ago by RMRG ▴ 10

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1.6k

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limma edger barcodeplot gene set enrichment mroast

updated 5.7 years ago by Gordon Smyth 48k • written 5.7 years ago by srmaruyama • 0

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2.7k

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limma goana gene set enrichment

5.8 years ago emy_66 • 0

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2.9k

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DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 5.8 years ago by Guangchuang Yu ★ 1.2k • written 5.8 years ago by kirannbishwa01 • 0

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1.1k

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gene ontology go analysis gene set enrichment gene set analysis News

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by triZZla • 0

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2.0k

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limma camera gene set analysis gene set enrichment

updated 6.6 years ago by Gordon Smyth 48k • written 6.6 years ago by natalia.pietrosemoli • 0

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2.2k

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topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 6.7 years ago by Lluís Revilla Sancho ▴ 720 • written 7.0 years ago by fromhj304 ▴ 10

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1.8k

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rna-seq bioinformatics gene ontology gene set enrichment go

updated 7.0 years ago by Guangchuang Yu ★ 1.2k • written 7.0 years ago by fromhj304 ▴ 10

11 results • Page 1 of 1

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

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Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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