Showing : gene set enrichment • reset
1
vote
1
reply
1.6k
views
PLAGE method fails in GSVA if an overlap between gene sets and genes in expressions is less than two
gsva plage differential expression gene set enrichment
6.4 years ago krassowski.michal ▴ 40
0
votes
2
replies
1.9k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
1
vote
2
replies
1.3k
views
Visualise gene set analysis plot
gene set analysis gene set enrichment limma
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
1
vote
1
reply
1.5k
views
Gene Set Enrichment based on gene presence/absence
gene set enrichment KEGG
updated 7.2 years ago by ▴ 760 • written 7.2 years ago by ▴ 10
0
votes
3
replies
2.2k
views
Barcodeplot limma function using two logFC lists
limma edger barcodeplot gene set enrichment mroast
updated 7.3 years ago by 52k • written 7.3 years ago by • 0
0
votes
4
replies
3.6k
views
No annotated genes found in universe error using goana and kegga
limma goana gene set enrichment
7.5 years ago emy_66 • 0
2
votes
2
replies
4.4k
views
enrichGO from DOSE, clusterprofiler is returning empty result.
DOSE clusterprofiler annotation gene ontology gene set enrichment
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 20
0
votes
1
reply
1.5k
views
News: Interested in developing a new gene set enrichment tool ?
gene ontology go analysis gene set enrichment gene set analysis News
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
0
votes
7
replies
3.0k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.2 years ago by 52k • written 8.3 years ago by • 0
1
vote
2
replies
3.1k
views
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 8.3 years ago by ▴ 760 • written 8.6 years ago by ▴ 10
1
vote
3
replies
2.8k
views
Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by ▴ 10
11 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0
Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…
Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0
The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …
Comment: parameters of filterByExpr by Paul Harrison ▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Votes
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
Answer: GAlignments Cigar to GRanges
parameters of filterByExpr
Answer: parameters of filterByExpr
Awards • All
Popular Question to Gordon Smyth 52k
Scholar to Hervé Pagès 16k
Popular Question to Bine ▴ 50
Popular Question to RobKo ▴ 10
Popular Question to gabriella.jacobson-eisenberg ▴ 20
Locations • All
D-77, 1st Floor, Noida Sector – 63, 18 minutes ago
France, 40 minutes ago
Barcelona, Spain, 43 minutes ago
Poland, 1 hour ago
Czechia, 2 hours ago
Traffic: 823 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6