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plgem
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702
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calculating PLGEM p-values...
PLGEM
8.9 years ago
pstopka
• 0
0
votes
0
replies
1.2k
views
PLGEM on metabolomic data?
miRNA
Metabolomics
Proteomics
Normalization
plgem
miRNA
Metabolomics
Proteomics
plgem
11.6 years ago
Norman Pavelka
▴ 140
0
votes
4
replies
1.1k
views
Fwd: FW: plgem
plgem
plgem
updated 11.9 years ago by
Olli Kannaste
▴ 20 • written 11.9 years ago by
Norman Pavelka
▴ 140
0
votes
1
reply
1.0k
views
Help on PLGEM R Package Data Import
Biobase
plgem
Biobase
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
896
views
Fwd: Help on PLGEM R Package Data Import
Biobase
plgem
Biobase
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
871
views
Fwd: plgem for spectral counts
limma
plgem
limma
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.0k
views
plgem for spectral counts
limma
plgem
limma
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.2k
views
limma for spectral counts
limma
plgem
limma
plgem
12.6 years ago
Amin Moghaddasi
▴ 130
0
votes
5
replies
2.1k
views
Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray
Proteomics
limma
plgem
Microarray
Proteomics
limma
plgem
updated 13.5 years ago by
Yolande Tra
▴ 120 • written 13.5 years ago by
Pavelka, Norman
▴ 70
0
votes
0
replies
988
views
replicable of *PLGEM*
plgem
cycle
plgem
cycle
13.6 years ago
Pavelka, Norman
▴ 70
0
votes
0
replies
807
views
'plgem' package bug fix
plgem
plgem
13.7 years ago
Pavelka, Norman
▴ 70
11 results • Page
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Recent ...
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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tangming2005
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James W. MacDonald
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