Showing : plgem • reset
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PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
11.6 years ago Norman Pavelka ▴ 140
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'plgem' package bug fix
plgem plgem
13.8 years ago Pavelka, Norman ▴ 70
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replicable of *PLGEM*
plgem cycle plgem cycle
13.6 years ago Pavelka, Norman ▴ 70
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Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray Proteomics limma plgem Microarray Proteomics limma plgem
updated 13.6 years ago by ▴ 120 • written 13.6 years ago by ▴ 70
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Fwd: Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
12.7 years ago Norman Pavelka ▴ 140
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limma for spectral counts
limma plgem limma plgem
12.7 years ago Amin Moghaddasi ▴ 130
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Fwd: plgem for spectral counts
limma plgem limma plgem
12.7 years ago Norman Pavelka ▴ 140
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plgem for spectral counts
limma plgem limma plgem
12.7 years ago Norman Pavelka ▴ 140
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1.0k
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Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
12.7 years ago Norman Pavelka ▴ 140
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Fwd: FW: plgem
plgem plgem
updated 11.9 years ago by ▴ 20 • written 11.9 years ago by ▴ 140
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calculating PLGEM p-values...
PLGEM
8.9 years ago pstopka • 0
11 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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