Bioconductor PreprocessQuantile

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

20 months ago kyj2226 • 0

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minfi bmiq noob preprocessQuantile champ

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by Lin ▴ 50

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minfi estimatecellcounts getSex preprocessQuantile

updated 7.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.2 years ago by fgc • 0

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Comment: Biological Pathway Database by peterparkerrbu • 0

Having the pathways available in PowerPoint format is a huge plus, as it makes them easy to use for presentations and teaching. The ability…

Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

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Answer: ROAST compare results with complex design

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