Bioconductor PreprocessQuantile

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

15 months ago kyj2226 • 0

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minfi bmiq noob preprocessQuantile champ

updated 4.5 years ago by James W. MacDonald 68k • written 4.5 years ago by Lin ▴ 50

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minfi estimatecellcounts getSex preprocessQuantile

updated 6.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 6.8 years ago by fgc • 0

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Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k

Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…

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Comment: ComBat with repeated measures

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

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