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profileplyr
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq
profileplyr
DiffBind
8 months ago
Muhammad
• 0
1
vote
3
replies
1.0k
views
Create merged ChIP heatmap across conditions
DiffBind
profileplyr
updated 18 months ago by
Rory Stark
★ 5.3k • written 18 months ago by
jesswhitts
• 0
2
votes
3
replies
2.5k
views
An error using Diffbind plotprofile
ChIPSeq
profileplyr
DiffBind
updated 4.4 years ago by
doug.barrows
▴ 20 • written 4.5 years ago by
zhuyi05
• 0
2
votes
5
replies
5.9k
views
News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 3.2 years ago by
Junsik
• 0 • written 4.7 years ago by
Rory Stark
★ 5.3k
1
vote
2
replies
1.4k
views
profileplyr: how to access and replace data from a profileplyr object
profileplyr
5.0 years ago
alexandre.blais
▴ 50
5 results • Page
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Comment: NUPOP usage
by
Tikaaaq2c
• 0
To use the NuPoP application for nucleosome positioning prediction, you first need to provide a DNA sequence in FASTA format. If you are us…
Comment: Chip Seq Analysis of RNA Polymerase 2
by
Tikaaaq2c
• 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
Tikaaaq2c
• 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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