Bioconductor Profileplyr

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chipseq profileplyr DiffBind

4 months ago Muhammad • 0

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DiffBind profileplyr

updated 14 months ago by Rory Stark ★ 5.2k • written 14 months ago by jesswhitts • 0

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ChIPSeq profileplyr DiffBind

updated 4.1 years ago by doug.barrows ▴ 20 • written 4.2 years ago by zhuyi05 • 0

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profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq

updated 2.8 years ago by Junsik • 0 • written 4.4 years ago by Rory Stark ★ 5.2k

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profileplyr

4.6 years ago alexandre.blais ▴ 50

5 results • Page 1 of 1

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Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k

Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

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