Bioconductor Profileplyr

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chipseq profileplyr DiffBind

5 months ago Muhammad • 0

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DiffBind profileplyr

updated 15 months ago by Rory Stark ★ 5.2k • written 15 months ago by jesswhitts • 0

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ChIPSeq profileplyr DiffBind

updated 4.1 years ago by doug.barrows ▴ 20 • written 4.2 years ago by zhuyi05 • 0

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profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq

updated 2.9 years ago by Junsik • 0 • written 4.4 years ago by Rory Stark ★ 5.2k

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profileplyr

4.7 years ago alexandre.blais ▴ 50

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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0

Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …

Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0

When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

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A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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