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Showing :
ComplexHeatmap
•
reset
2
votes
2
replies
216
views
ComplexHeatmap crashing R session
ComplexHeatmap
5 weeks ago
Felipe
• 0
2
votes
3
replies
876
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 13 months ago by
elefth.pavlos
▴ 40 • written 13 months ago by
Sooni
▴ 10
3
votes
4
replies
2.6k
views
ComplexHeatmap - Default distance and hierarchical clustering methods
ComplexHeatmap
Complex
updated 13 months ago by
elefth.pavlos
▴ 40 • written 13 months ago by
Katharina
• 0
2
votes
5
replies
1.4k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
15 months ago
Katharina
• 0
0
votes
1
reply
1.4k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 18 months ago by
Zuguang Gu
▴ 240 • written 19 months ago by
תום
• 0
0
votes
0
replies
876
views
Boxplot annotation per cluster and column using ComplexHeatmap
ComplexHeatmap
19 months ago
gdeniz
• 0
2
votes
2
replies
2.0k
views
ComplexHeatmap: Change font size of annotation axis values
ComplexHeatmap
updated 7 months ago by
franciscaelibethgalvez
• 0 • written 20 months ago by
nalaspina
▴ 10
3
votes
3
replies
2.8k
views
ComplexHeatmap install error
ComplexHeatmap
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
nalaspina
▴ 10
2
votes
3
replies
2.1k
views
Complexheatmap row-names not showing up
ComplexHeatmap
21 months ago
krushnach80
• 0
1
vote
1
reply
1.9k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap
Anno
Annotation
updated 2.5 years ago by
Zuguang Gu
▴ 240 • written 2.5 years ago by
Ashish Jain
▴ 10
1
vote
0
replies
983
views
ComplexHeatmap: Swapping between left_annotation and right_annotation results in a blank space
anno_block
ComplexHeatmap
left_annotation
right_annotation
2.7 years ago
glich
• 0
2
votes
5
replies
3.1k
views
News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 15 months ago by
Junsik
• 0 • written 2.8 years ago by
Rory Stark
★ 5.1k
3
votes
2
replies
2.0k
views
Complex Heatmap shows just one color
Heatmap
ComplexHeatmap
colorRamp
2.9 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.9k
views
ComplexHeatmap: setting column_order changes plotted values
ComplexHeatmap
3.0 years ago
vanbelj
▴ 20
2
votes
4
replies
5.8k
views
Complexheatmap Installation Issue
ComplexHeatmap
3.2 years ago
legro.melanie
• 0
0
votes
0
replies
602
views
How to show rownames in densityheatmaps
ComplexHeatmap
3.3 years ago
adR
▴ 30
0
votes
2
replies
1.1k
views
K Means Clustering Two Matrices for ComplexHeatmap
complexheatmap
R
3.5 years ago
pthom010
• 0
0
votes
2
replies
11k
views
ComplexHeatmap - how to change the position of the legend of rowAnnotation
ComplexHeatmap
updated 3.7 years ago by
Zuguang Gu
▴ 240 • written 3.7 years ago by
AR3513
• 0
1
vote
6
replies
9.5k
views
Change fontsize/remove name of annotation ComplexHeatmap package
r
rnaseq
complexHeatmap
annotation
updated 3.8 years ago by
Zuguang Gu
▴ 240 • written 3.8 years ago by
camillab.
▴ 10
0
votes
1
reply
1.4k
views
ComplexHeatmap's UpSet plots: how to convert a binary matrix into a list of sets
ComplexHeatmap
UpSet
3.8 years ago
moldach
▴ 20
3
votes
2
replies
2.0k
views
Clustering differentially expressed genes in response to multiple treatments (using edgeR)
edger
complexheatmap
R
clustering
updated 3.9 years ago by
Gordon Smyth
50k • written 3.9 years ago by
eggrandio
• 0
0
votes
6
replies
4.5k
views
Error: node stack overflow when trying to plot large dataset using Complexheatmap
Complexheatmap
updated 4.5 years ago by
Zuguang Gu
▴ 240 • written 4.5 years ago by
AB
▴ 110
3
votes
7
replies
3.0k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix
heatmap
ComplexHeatmap
missing values
R
updated 4.5 years ago by
Zuguang Gu
▴ 240 • written 4.5 years ago by
mohammedtoufiq91
▴ 10
3
votes
2
replies
6.6k
views
ComplexHeatmap removes row labels if annotation is added
annotation
show_row_names
complexheatmap
4.6 years ago
alexw858
• 0
0
votes
1
reply
778
views
ComplexHeatmap : can't find the arguments inherited from the previous version
ComplexHeatmap
updated 4.9 years ago by
Zuguang Gu
▴ 240 • written 4.9 years ago by
shbrief
▴ 20
4
votes
3
replies
2.7k
views
Align legends to each heatmap in a ComplexHeatmap with 2 heatmaps
complexheatmap
r
updated 4.9 years ago by
Zuguang Gu
▴ 240 • written 4.9 years ago by
Ram
▴ 190
0
votes
1
reply
2.1k
views
ComplexHeatmap package will not display heatmaps
ComplexHeatmap
software error
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
jmKeith
• 0
2
votes
1
reply
3.7k
views
Make UpSet function display numbers above the bars
ComplexHeatmap
updated 5.0 years ago by
Zuguang Gu
▴ 240 • written 5.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.2k
views
Error with ComplexHeatmap. Showing only part of image.
Complexheatmap
5.1 years ago
Goku
• 0
0
votes
2
replies
1.5k
views
ComplexHeatmap column dendrogram
complexheatmap
updated 6.0 years ago by
jokergoo
▴ 200 • written 6.1 years ago by
James W. MacDonald
65k
5
votes
12
replies
9.8k
views
Combining ComplexHeatmap with other plot types
complexheatmap
ggplot2
updated 6.3 years ago by
Zuguang Gu
▴ 240 • written 6.3 years ago by
my4
▴ 10
1
vote
5
replies
8.6k
views
How to add both row and column labels to Complexheatmap
complexheatmap
labels
6.5 years ago
dilawerkh4
• 0
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.5 years ago
Luiz
• 0
0
votes
1
reply
1.7k
views
about using the names of the rows and columns in ComplexHeatmap
complexheatmap
6.5 years ago
Bogdan
▴ 670
3
votes
2
replies
4.1k
views
Automatic color assignment for annotations on ComplexHeatmap
complexheatmap
6.5 years ago
CodeAway
▴ 70
0
votes
0
replies
1.2k
views
Changing row height in ComplexHeatmap
complexheatmap
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
johnnytam100
• 0
2
votes
3
replies
2.1k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap
maftools
updated 6.6 years ago by
anand_mt
▴ 90 • written 6.6 years ago by
Bogdan
▴ 670
0
votes
2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap
metabolomics
updated 6.7 years ago by
sina.nassiri
▴ 130 • written 6.7 years ago by
Mina
• 0
1
vote
2
replies
2.2k
views
legend with gradient in ComplexHeatmap
complexheatmap
6.7 years ago
AR3513
• 0
2
votes
2
replies
1.3k
views
about reshaping a data frame
maftools
complexheatmap
updated 6.7 years ago by
Haiying.Kong
▴ 110 • written 6.7 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.5k
views
Oncoprint function in ComplexHeatmap
complexheatmap
6.8 years ago
Bogdan
▴ 670
0
votes
5
replies
2.0k
views
Problem trying to decorate a heatmap inside a function
complexheatmap
6.9 years ago
AR3513
• 0
0
votes
1
reply
1.1k
views
Error in Heatmap...
complexheatmap
7.0 years ago
baranikumar22
• 0
8
votes
1
reply
9.2k
views
extracting the genes associated with the clusters
heatmap.2
pheatmap
complexheatmap
heatplus
updated 7.0 years ago by
Gavin Kelly
▴ 680 • written 7.0 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Drawing a HeatMapList while retaining the original row order of each heat map
complexheatmap
updated 7.0 years ago by
Steve Lianoglou
★ 13k • written 7.1 years ago by
d r
▴ 150
1
vote
2
replies
1.8k
views
Error when using multiple heatmaps in ComplexHeatmaps
ComplexHeatmap
bug
7.2 years ago
brt381
• 0
2
votes
1
reply
3.4k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap
heatmap.2
dendrogram
dendextend
heatmap
updated 7.4 years ago by
jokergoo
▴ 200 • written 7.4 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.5k
views
How to manage multiple legends in heatmap_legend_param (ComplexHeatmap) ?
ComplexHeatmap
complexheatmap
7.5 years ago
g.atla
▴ 10
3
votes
2
replies
17k
views
Plotting several heatmaps onto the same grid with the ComplexHeatmap package in R
complexheatmap
updated 7.5 years ago by
jokergoo
▴ 200 • written 7.5 years ago by
chriad
▴ 10
0
votes
1
reply
1.1k
views
ComplexHeatmap Legend labels
complexheatmap
7.6 years ago
vedran.franke
• 0
50 results • Page
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Recent ...
Replies
Comment: DEG Filtering
by
Amit
• 0
Hello Gordon, The PCA plot for RMA normalized data shows Mixing of samples. Is it Batch Effect ? Because when I apply ARSyNseq() and again …
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
James W. MacDonald
65k
Let's take a closer look. ``` > library(GEOquery) ## some random data > getGEOSuppFiles("GSE193983") > setwd("GSE193983/") > untar("GSE19…
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Votes
Comment: DEG Filtering
Answer: DEG Filtering
Answer: DEG Filtering
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
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