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error on heatmap
PROMISE metagenomeSeq PROMISE metagenomeSeq
updated 9.0 years ago by ▴ 280 • written 9.0 years ago by ★ 12k
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subsetting SummarizedExperiments - a proposal (or a hack?)
Cancer IRanges GenomicRanges PROMISE Cancer IRanges GenomicRanges PROMISE
updated 9.1 years ago by 13k • written 9.1 years ago by ★ 1.6k
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getting an error with ggbio
PROMISE PROMISE
10.2 years ago Abhishek Pratap ▴ 410
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Generating GEO submission files from beadarray summary data
beadarray lumi PROMISE beadarray lumi PROMISE
updated 10.5 years ago by ★ 1.1k • written 10.5 years ago by ★ 4.2k
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Error, while using produceGEOSampleInfoTemplate
beadarray lumi PROMISE beadarray lumi PROMISE
updated 10.5 years ago by ★ 4.2k • written 10.5 years ago by ▴ 350
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!SPAM: Christmas gifft idea!
PROMISE PROMISE
14.3 years ago Earnhardt Tako ▴ 10
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gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
15.5 years ago Yan Zhang ▴ 130
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Looking for extra Income? Please Read.
PROMISE PROMISE
15.6 years ago hardware.inc505@gmail.com ▴ 10
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Biocore response to Affymetrix data format changes
Microarray GO Network Cancer cdf affy PROMISE Microarray GO Network Cancer cdf affy
19.7 years ago Kulp, David ▴ 20
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Answer: [limma::kegga] Pathway names all NA by Gordon Smyth 47k
This is due to a change in the KEGG website. I updated limma a month ago to fix the problem, so just reinstall limma and the problem will b…
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0
That's great. Thank you for clarifying the confusion. Cheers,
Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40
Tank you James. All fine, but for preprocessIllumina, which apparently won't work
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…
Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k
Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…
Votes
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Are polynomial contrasts for a time factor possible in DESeq2?
Are polynomial contrasts for a time factor possible in DESeq2?
Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
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Scholar to Gordon Smyth 47k
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