Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rGADEM
•
reset
0
votes
0
replies
626
views
rGADEM caught segfault
software error
rgadem
caught segfault
GADEM
5.0 years ago • updated 4.9 years ago
vgms3311
• 0
0
votes
1
reply
1.3k
views
rGADEM error retrieving sequences
rgadem
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
christopher.chaney
• 0
0
votes
0
replies
742
views
rGADEM bit calloc error
rGADEM
6.5 years ago
emiliomastriani
• 0
1
vote
6
replies
1.0k
views
rGADEM not giving desired motif consistently
rGADEM
updated 6.6 years ago by
Charles Joly Beauparlant
▴ 170 • written 6.6 years ago by
vinod.acear
▴ 50
0
votes
3
replies
1.1k
views
Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 7.2 years ago by
emercier
• 0 • written 7.3 years ago by
w.jarassier
• 0
0
votes
0
replies
1.1k
views
ChIPpeakAnno
rGADEM
MotIV
MotifDb
rGADEM
MotIV
MotifDb
8.4 years ago
Bahar
▴ 10
0
votes
2
replies
1.1k
views
rGADEM crash
rGADEM
rGADEM
9.4 years ago
Lakshmanan Iyer
▴ 50
0
votes
1
reply
908
views
ChIPpeakAnno "examplePattern.fa" file
rGADEM
MotifDb
rGADEM
MotifDb
updated 9.4 years ago by
José Luis Lavín
▴ 80 • written 9.5 years ago by
Paul Shannon
▴ 750
0
votes
0
replies
891
views
rGADEM: e-Values for reported motifs
rGADEM
rGADEM
9.5 years ago
Alexandra Zerck
▴ 10
0
votes
0
replies
632
views
rGADEM crash
rGADEM
rGADEM
10.6 years ago
Arnaud Droit
▴ 20
0
votes
1
reply
853
views
rGADEM crashes on Ubuntu 10.04 64-bit
rGADEM
rGADEM
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
Dave S
▴ 10
0
votes
0
replies
719
views
New version of rGADEM - ChIP-Seq, de novo motif discovery
Transcription
rGADEM
Transcription
rGADEM
11.0 years ago
Charles Joly
▴ 10
0
votes
0
replies
900
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
11.1 years ago
Mercier Eloi
▴ 60
0
votes
0
replies
761
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
11.1 years ago
Chris Whelan
▴ 60
0
votes
4
replies
1.1k
views
occurrence of rGADEM motifs
rGADEM
MotIV
rGADEM
MotIV
updated 11.1 years ago by
Charles Joly Beauparlant
▴ 170 • written 11.1 years ago by
mattia pelizzola
▴ 200
15 results • Page
1 of 1
Recent ...
Replies
Answer: Correlation between two different datasets: between results of RNAseq and absenc
by
Michael Love
37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot
by
Michael Love
37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat
by
Michael Love
37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Comment: Which is the best type of data for correlation or survival analysis
by
Michael Love
37k
VST is the variance stabilizing transformation, and in the code it produces `vsd` a variance stabilized dataset. VST data = `vsd`. > can I…
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Definitely, you are right. I Checked the ref file (cDNA fasta and gtf file ) gene Id is different. I downloaded both gtf and cDNA fasts fi…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
Awards
• All
Scholar
to
James W. MacDonald
60k
Popular Question
to
Matthew Ritchie
▴ 1000
Scholar
to
Thomas Carroll
▴ 410
Popular Question
to
rbenel
▴ 20
Popular Question
to
Gordon Smyth
46k
Locations
• All
United States,
10 minutes ago
United States,
31 minutes ago
Australia/Melbourne/Olivia Newton-John Cancer Research Institute,
52 minutes ago
Zheng Zhou,
56 minutes ago
United States,
59 minutes ago
Traffic: 269 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6