Showing : rae230a • reset
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RMA (affy) followed by SAM (samr)
rae230a rae230b cdf affy PROcess rae230a rae230b cdf affy PROcess
updated 14.7 years ago by ▴ 900 • written 14.7 years ago by ▴ 30
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org.Hs.eg question
Annotation rae230a convert Annotation rae230a convert
updated 16.9 years ago by ★ 7.2k • written 16.9 years ago by ▴ 350
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How to get affyId from GOstats output
GO rae230a GO rae230a
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 310
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2
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views
How to get probeset ID
rae230a cdf affy gcrma matchprobes rae230a cdf affy gcrma matchprobes
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 310
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views
Combining two datasets - help to use GeneMeta.
rae230a affy GeneMeta rae230a affy GeneMeta
updated 19.7 years ago by ▴ 230 • written 19.7 years ago by ▴ 480
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PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 20.3 years ago by 68k • written 20.4 years ago by ▴ 80
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1
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1.5k
views
annotation packages and ACCNUM mappings
Annotation moe430a rae230a Annotation moe430a rae230a
updated 20.6 years ago by ▴ 780 • written 20.6 years ago by ▴ 160
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affy: Trouble Creating Custom Processing Methods for summary expression
rae230a rae230a
20.7 years ago Alexander C Cambon ▴ 40
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1.4k
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affy: Trouble Creating Custom Processing Methods for summary expression
rae230a rae230a
updated 20.7 years ago by ★ 1.1k • written 20.7 years ago by ▴ 40
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Rat 230 2.0 annotation package
Annotation rae230a rae230b Annotation rae230a rae230b
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 110
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2
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2.1k
views
R --vanilla and Annotation pkg
rae230a rgu34a cdf probe rae230a rgu34a cdf probe
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ★ 1.1k
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views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 100
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views
bug in moe430a annotation packages
Annotation moe430a rae230a probe Annotation moe430a rae230a probe
updated 21.5 years ago by ★ 2.9k • written 21.5 years ago by ▴ 160
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5
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1.4k
views
How to use datapackage homology
hgu133a rae230a hgu133a rae230a
updated 21.6 years ago by ★ 5.5k • written 21.6 years ago by ▴ 110
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1
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1.0k
views
Help Regarding Analysis.
Microarray Normalization GO hu6800 rae230a probe affy PROcess Microarray Normalization
updated 21.7 years ago by 68k • written 21.7 years ago by ▴ 10
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rae230bprobe library?
rae230a rae230b probe rae230a rae230b probe
21.8 years ago Andrew Harrison ▴ 60
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780
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rae230b metadata
rae230a rae230b probe rae230a rae230b probe
21.8 years ago Caroline Johnston ▴ 70
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1
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views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 22.4 years ago by 6.7k • written 22.4 years ago by ▴ 60
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views
rae230a/b data packages buggy?
Annotation rae230a rae230b affy annaffy Annotation rae230a rae230b affy annaffy
updated 22.5 years ago by ★ 2.9k • written 22.5 years ago by ▴ 110
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5
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Problem using make.cdf.env
rae230a cdf rae230a cdf
updated 22.7 years ago by 68k • written 22.7 years ago by ▴ 200
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RAE230A CDF
rae230a cdf affy rae230a cdf affy
22.8 years ago Paul Boutros ▴ 200
21 results • Page 1 of 1
Recent ...
Replies
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Votes
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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