Bioconductor Rbgl

Showing : rbgl • reset

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1.2k

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RBGL RBGL

21.2 years ago Roels, Steven ▴ 50

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1.2k

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RBGL RBGL

updated 21.2 years ago by Jeff Gentry ★ 3.9k • written 21.2 years ago by Jeff Lande ▴ 110

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1.4k

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GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph

updated 21.3 years ago by rgentleman ★ 5.5k • written 21.3 years ago by Dr Gyorffy Balazs ▴ 320

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1.5k

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Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer

updated 22.2 years ago by Douglas Bates ▴ 180 • written 22.2 years ago by Baker, Stephen ▴ 160

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2.4k

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Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy

updated 22.2 years ago by Vincent J. Carey, Jr. 6.7k • written 22.2 years ago by Weiming Zhang ▴ 30

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1.7k

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Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase

22.7 years ago • updated 22.6 years ago madman@jimmy.harvard.edu ▴ 850

56 results • Page 2 of 2

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to jared.andrews07 ▴ 30

Popular Question to James W. MacDonald 68k