Bioconductor Read.table

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input files read.table maxmatch Mummer

updated 9.1 years ago by Malcolm Cook ★ 1.6k • written 9.1 years ago by a.afshinfard ▴ 10

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read.table

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data.frame read.table

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read.table TXT

updated 4.5 years ago by James W. MacDonald 66k • written 4.5 years ago by ekl • 0

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Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Votes

A: Analyzing data without replicates using DiffBind

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

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