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Rscript data.frame forloop R

10 months ago Ankit • 0

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287

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data.frame tcga reshape data

updated 2.1 years ago by Steve Lianoglou 13k • written 2.1 years ago by mario.zanfardino ▴ 160

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309

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software error limma data.frame

updated 2.7 years ago by Gordon Smyth 43k • written 2.7 years ago by azmir004 • 0

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464

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data.frame read.table

updated 3.2 years ago by davide risso ▴ 870 • written 3.2 years ago by viviana.marin-esteban • 0

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363

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R noiseq data.frame

3.4 years ago aokoro • 0

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811

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annotationhub roadmap project rpkm data.frame

4.7 years ago • updated 4.6 years ago wcstcyx ▴ 30

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674

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sushi plotBed data.frame

5.2 years ago • updated 5.1 years ago waqasnayab • 0

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flowcore transform data.frame

updated 5.2 years ago by Jiang, Mike ★ 1.3k • written 5.2 years ago by Julia • 0

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789

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granges data.frame sort

updated 5.6 years ago by Michael Lawrence 11k • written 5.6 years ago by igor ▴ 40

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499

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data.frame

updated 5.7 years ago by Ryan C. Thompson 7.6k • written 5.7 years ago by qiuworld.ou • 0

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929

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EdgeR data.frame glmLRT

updated 5.8 years ago by Gordon Smyth 43k • written 5.8 years ago by amoltej ▴ 10

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Answer: Seurat: normalized data in the integrated assay by Peter Hickey ▴ 460

Seurat is not a Bioconductor package. I suggest asking on their own discussion forum https://github.com/satijalab/seurat/discussions

Comment: matrix with Salmon gene-level quantifications in DESeq by Michael Love 33k

I feel like this is definitely covered in the vignette. We show importing multiple samples to gene level.

Comment: matrix with Salmon gene-level quantifications in DESeq by luca.s ▴ 10

Thanks James for the quick answer, but does the tximport package work also for importing a single matrix in which are contained all gene qu…

Comment: ORF finding in DECIPHER by Erik Wright ▴ 150

Thanks for reporting this issue. 1. Which version of DECIPHER are you using? 2.18 has known bugs but 2.20 should be fine. 2. Are your se…

Comment: DESeq2: Variable Importance by Michael Love 33k

What you do with the deviance is up to you, I was just pointing out that it is an outputted quantity.

Votes

Correct use of TMM / normalization factors based on large bins

Answer: How to do annotation with Limma

Final List of Deprecated Packages for Bioc3.13

Answer: RNAseq : identical sample-sample distances after using limma::removeBatchEffect

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Teacher to A ▴ 40

Popular Question to Guido Hooiveld ★ 3.0k