Bioconductor Data.frame

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1.2k

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subjunc data.frame myExons Rsubread

updated 23 months ago by ATpoint ★ 4.8k • written 23 months ago by Sukeerthi • 0

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882

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Rscript data.frame forloop R

4.8 years ago Ankit ▴ 20

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1.7k

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data.frame tcga reshape data

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by mario.zanfardino ▴ 160

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975

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software error limma data.frame

updated 6.7 years ago by Gordon Smyth 52k • written 6.7 years ago by azmir004 • 0

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1.2k

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data.frame read.table

updated 7.1 years ago by davide risso ▴ 980 • written 7.2 years ago by viviana.marin-esteban • 0

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1.2k

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R noiseq data.frame

7.3 years ago aokoro • 0

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annotationhub roadmap project rpkm data.frame

8.6 years ago wcstcyx ▴ 30

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1.4k

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sushi plotBed data.frame

9.1 years ago waqasnayab • 0

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3.8k

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flowcore transform data.frame

updated 9.1 years ago by Jiang, Mike ★ 1.3k • written 9.1 years ago by Julia ▴ 20

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1.8k

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granges data.frame sort

updated 9.6 years ago by Michael Lawrence ★ 11k • written 9.6 years ago by igor ▴ 50

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1.1k

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data.frame

updated 9.7 years ago by Ryan C. Thompson ★ 7.9k • written 9.7 years ago by qiuworld.ou • 0

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2.0k

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EdgeR data.frame glmLRT

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by amoltej ▴ 10

12 results • Page 1 of 1

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Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

It worked, I think I finally understand and accept that fact. Sorry and thank you again !

Comment: parameters of filterByExpr by Gordon Smyth 52k

You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…

Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi by Gordon Smyth 52k

modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

Probably not. Any given gene may be appended with many different GO terms, so you would end up with something that is not very useful. ``…

Comment: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

`heatmap.2` is a CRAN package, and that's the relevant issue for this plot. It's got nothing to do with `DESeq2` or any other Bioconductor …

Votes

Answer: LogFC values in edgeR - w/wo intercept

How to formulate 2 factor nested design in DESeq2

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

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