Showing : referencecn.mops • reset
5
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7
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1.1k
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about the runs with cn.mops
cn.mops referencecn.mops
5.6 years ago Bogdan ▴ 660
3
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1
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872
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R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 5.9 years ago by ▴ 540 • written 6.1 years ago by ▴ 660
1
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2
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912
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cn.mops: NA in the output of referencecn.mops
cn.mops referencecn.mops
updated 6.3 years ago by ▴ 540 • written 6.4 years ago by ▴ 90
0
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4
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946
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cn.mops encounter negative width problem
cn.mops referencecn.mops
updated 5.9 years ago by ▴ 540 • written 5.9 years ago by • 0
0
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0
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451
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How to interpret out of referencecn.mops
referencecn.mops cn.mops
4.7 years ago eddie.kaho.ho • 0
0
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0
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662
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Mean and median values in cn.mops cnvs output
cn.mops referencecn.mops
updated 4.2 years ago by 0 • written 4.3 years ago by • 0
6 results • Page 1 of 1
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Comment: Help with Error in DiffBind by Chris • 0
Thank you for your help! This is what I got when run: result <- dba.analyze(samples, bParallel=FALSE) [W::hts_idx_load3] The ind…
Answer: Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists. by shepherl 3.4k
Bioconductor does not maintain the Anaconda repository. You should reach out to them.
Comment: limma with or without intercept gives different results by Sydney • 0
Thank you for the extra set of eyes! I was trying a lot of different options, including trend, and I forgot to remove it when copy+pasting …
Comment: limma with or without intercept gives different results by ATpoint ★ 2.4k
You should write functions or loops/lapply constructs to ensure that the exact same chunk of code runs with different params (here that wou…
Comment: limma with or without intercept gives different results by Sydney • 0
Hi Gordon, thanks for the clarification regarding subsetting the data. I re-ran it with the whole data set with and without the intercept. …
Votes
Answer: Accounting for breadth of coverage while using DESeq2
Answer: limma with or without intercept gives different results
Comment: limma with or without intercept gives different results
Comment: Help with Error in DiffBind
Postdoc at EMBL: spatial and single-cell computational biology for precision oncology, based in Heidelberg, Germany
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