Bioconductor Rnaseq

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1.9k

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sgseq rnaseq

updated 3 days ago by Leonard Goldstein ▴ 220 • written 6.7 years ago by Sylvain Foisy ▴ 80

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244

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by Ashley • 0

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224

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 17 days ago by ATpoint ★ 4.1k • written 17 days ago by james.zhang20 • 0

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165

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DESeq2 RNAseq

updated 24 days ago by Michael Love 42k • written 24 days ago by kcarey • 0

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191

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limma RNASeq voom

written 26 days ago by taur.vil • 0

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239

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technicalReplicates BatchEffect limma RNASeq

29 days ago • updated 27 days ago catv • 0

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309

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limma edgeR RNASeq

updated 9 days ago by Gordon Smyth 50k • written 4 weeks ago by Shaimaa Gamal • 0

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891

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clusterProfiler RNASeq

updated 25 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

8 results • Page 1 of 1

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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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