Showing : Proteomics • reset
4
votes
3
replies
159
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 7 weeks ago by 42k • written 8 weeks ago by ▴ 10
5
votes
6
replies
260
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 7 weeks ago by 42k • written 8 weeks ago by ▴ 10
0
votes
0
replies
69
views
Limma design multi-level experiment with 3 time points
R proteomics limma
8 weeks ago ellen2270 • 0
0
votes
4
replies
127
views
DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics DEP
9 weeks ago rina • 0
0
votes
0
replies
85
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
11 weeks ago Robert Castelo ★ 2.7k
2
votes
1
reply
133
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 3 months ago by 56k • written 3 months ago by ★ 1.5k
0
votes
0
replies
177
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4 months ago Laura • 0
1
vote
2
replies
126
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
4 months ago Oliver • 0
0
votes
3
replies
110
views
Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
4 months ago Gilad • 0
1
vote
2
replies
135
views
error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 5 months ago by ▴ 40 • written 5 months ago by • 0
5
votes
6
replies
241
views
possible package naming conflict
proteomics
5 months ago Tobias ▴ 30
1
vote
0
replies
93
views
News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
5 months ago info ▴ 10
0
votes
0
replies
67
views
Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow proteomics proteinProfiles
5 months ago yueli7 ▴ 10
0
votes
1
reply
119
views
R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 5 months ago by ▴ 710 • written 5 months ago by ▴ 10
0
votes
0
replies
128
views
Job: Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland JobPosting Basel Proteomics
5 months ago Robert Ivanek ▴ 670
0
votes
3
replies
225
views
Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 6 months ago by ▴ 270 • written 6 months ago by • 0
3
votes
0
replies
256
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
6 months ago Johannes Rainer ★ 1.9k
2
votes
0
replies
127
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
7 months ago Johannes Rainer ★ 1.9k
1
vote
6
replies
337
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 9 months ago by 1.5k • written 9 months ago by • 0
0
votes
0
replies
409
views
Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer RNASeq proteomics Job visualisation
11 months ago Laurent Gatto 1.5k
0
votes
0
replies
75
views
How to generate custom MS database using CustomProDB?
r proteomics
12 months ago nattzy94 • 0
2
votes
1
reply
139
views
Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
13 months ago daniel.magnus.bader ▴ 40
2
votes
1
reply
122
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
14 months ago harelarik ▴ 50
1
vote
0
replies
122
views
News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
15 months ago Laurent Gatto 1.5k
1
vote
2
replies
303
views
Proteomics: package/statistics to compare very different LFQ-proteomes
dep proteomics limma
16 months ago Rob • 0
0
votes
0
replies
184
views
Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq DNA-seq ATAC-seq proteomics microbiome Job
16 months ago lhuang7 ▴ 50
3
votes
0
replies
1.4k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
18 months ago • updated 16 months ago Gordon Smyth 42k
0
votes
0
replies
206
views
News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
16 months ago shepherl 2.6k
0
votes
0
replies
282
views
News: course - Protemics with R and Bioconductor - 17-19 February 2020 in Berlin
Bioconductor R Proteomics News
17 months ago info ▴ 10
0
votes
0
replies
125
views
proteoQC throwing error after running
ProteoQC Proteomics
18 months ago laural710 • 0
0
votes
2
replies
318
views
Total Area Sum Intensity based Normalization for label-free quantitative proteomics
normalization proteomics label-free
18 months ago amolares • 0
0
votes
3
replies
245
views
Writing a loop through multiple fasta files and named files (is it possible with MSGFplus?)
MSGF+ Proteomics r
updated 19 months ago by 25k • written 19 months ago by • 0
0
votes
0
replies
124
views
DEP package - Understanding the results table
dep proteomics logFC
19 months ago rina • 0
0
votes
0
replies
201
views
DEP: TMT analysis from MaxQuant output
DEP TMT proteomics
19 months ago dparrine • 0
1
vote
0
replies
1.5k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
19 months ago Laurent Gatto 1.5k
0
votes
0
replies
197
views
News: Protemics with R and Bioconductor course in Berlin
R Proteomics News
20 months ago info ▴ 10
0
votes
0
replies
210
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
20 months ago tatabox • 0
0
votes
8
replies
1.1k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 20 months ago by • 0 • written 3.3 years ago by ▴ 20
3
votes
3
replies
350
views
Clarification of results tables in DEP
DEP proteomics
updated 21 months ago by ▴ 70 • written 22 months ago by ▴ 480
1
vote
3
replies
323
views
Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
Limma proteomics limma
updated 23 months ago by • 0 • written 23 months ago by • 0
2
votes
2
replies
258
views
Where can I get functional bins for Arabidopsis thaliana genome (AGIs)
r proteomics RNA-Seq
updated 2.1 years ago by ▴ 180 • written 2.1 years ago by ▴ 10
0
votes
0
replies
225
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
2.1 years ago Wuschel ▴ 10
0
votes
2
replies
291
views
Comparative proteome analysis of two different species
proteomics LC-MS/MS
updated 2.1 years ago by 1.5k • written 2.1 years ago by • 0
1
vote
0
replies
957
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
2.2 years ago • updated 2.1 years ago Laurent Gatto 1.5k
1
vote
2
replies
241
views
Errors installing "shinyTANDEM" package
software error proteomics
updated 2.1 years ago by 1.5k • written 2.1 years ago by • 0
1
vote
2
replies
570
views
Errors installing mzR package
proteomics error
updated 2.2 years ago by 1.5k • written 2.2 years ago by • 0
1
vote
0
replies
708
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
2.2 years ago Laurent Gatto 1.5k
4
votes
5
replies
458
views
How to convert a xlsx data file to MSnSet format?
msnbase msmstests proteomics lc-ms/ms msnID
updated 2.2 years ago by 1.5k • written 2.2 years ago by ▴ 10
0
votes
3
replies
283
views
What does component or SCX classification in iTRAQ/TMT experiment represent?
proteomics
updated 2.5 years ago by 1.5k • written 2.5 years ago by • 0
1
vote
1
reply
471
views
Define batch effect variables before removing them or getting rid of hidden surrogate variables
batch effect correction sva proteomics
2.5 years ago Sebastian Hesse ▴ 50
191 results • Page 1 of 4
Recent ...
Replies
Answer: DiffBind by Rory Stark ★ 3.8k
I'll answer the second question first. You should not accessing the `$binding` matrix directly -- the chromosome names are factor numbers,…
Comment: How to download the ChAMP dependency ChAMPdata by shepherl 2.6k
You could try increasing the timeout limit for downloading files. I increased mine in a `.Rprofile` script so its persistent in all sessio…
Comment: DiffBind reporting error by Rory Stark ★ 3.8k
If you could give me access to your `dbind_de` object, I can have a look at what is going on. it would help to see the sequence of calls yo…
Comment: limma - removing samples? by RMP87 • 0
Thank you very much for the explanation. Making it more precise. Could I analyze and normalize all samples from a dataset even though I had…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ? by Saulius • 0
Yes - I think you are right once more. Thanks for taking so much time to look into this. Size factors come in twice in the code of `cqn`: …
Votes
Effect of feature number on adjusted p-values
Effect of feature number on adjusted p-values
A: Using DADA2 output for DESeq2
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
Comment: Error wth Installation BiocManager
Awards • All
Teacher to James W. MacDonald 56k
Scholar to Michael Love 32k
Popular Question to veronique.storme • 0
Popular Question to Gordon Smyth 42k
Scholar to Aaron Lun ★ 26k
Locations • All
Sydney, 3 minutes ago
United States, 3 minutes ago
United States, 4 minutes ago
Brazil, 9 minutes ago
United States, 11 minutes ago
Traffic: 485 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6