Showing : Proteomics • reset
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How to remove batch effect on DEP protemics package?
Proteomics DEP MassSpectrometryData
updated 8 days ago by • 0 • written 9 days ago by • 0
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0
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50
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what is the difference between iBAQ or LFQ?
Proteomics DEP limma
16 days ago • updated 11 days ago barrypraveen • 0
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4
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141
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How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics limma MassSpectrometry
4 weeks ago barrypraveen • 0
4
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3
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286
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Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 4 months ago by 43k • written 4 months ago by ▴ 10
5
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6
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355
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4 months ago by 43k • written 4 months ago by ▴ 10
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124
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Limma design multi-level experiment with 3 time points
R proteomics limma
4 months ago ellen2270 • 0
0
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4
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198
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DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics DEP
4 months ago rina ▴ 20
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159
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
5 months ago Robert Castelo ★ 2.7k
2
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1
reply
257
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Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 5 months ago by 57k • written 5 months ago by ★ 1.5k
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236
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
7 months ago Laura • 0
1
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2
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181
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calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
7 months ago Oliver • 0
0
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3
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183
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Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
7 months ago Gilad • 0
1
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2
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195
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error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 7 months ago by ▴ 40 • written 7 months ago by • 0
5
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6
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321
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possible package naming conflict
proteomics
7 months ago Tobias ▴ 30
1
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0
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156
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
7 months ago info ▴ 10
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0
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109
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Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow proteomics proteinProfiles
8 months ago yueli7 ▴ 10
0
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1
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222
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 8 months ago by ▴ 800 • written 8 months ago by ▴ 10
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0
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180
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Job: Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland JobPosting Basel Proteomics
8 months ago Robert Ivanek ▴ 680
0
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3
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303
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Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 8 months ago by ▴ 270 • written 8 months ago by • 0
3
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0
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340
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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
9 months ago Johannes Rainer ★ 1.9k
2
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0
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195
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Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
10 months ago Johannes Rainer ★ 1.9k
1
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6
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561
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DEP package: Problems installing on macOS
software error DEP proteomics
updated 12 months ago by 1.5k • written 12 months ago by • 0
0
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462
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer RNASeq proteomics Job visualisation
13 months ago Laurent Gatto 1.5k
0
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0
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108
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How to generate custom MS database using CustomProDB?
r proteomics
15 months ago nattzy94 • 0
2
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1
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205
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Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
16 months ago daniel.magnus.bader ▴ 40
2
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1
reply
169
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
17 months ago harelarik ▴ 50
1
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0
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181
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News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
17 months ago Laurent Gatto 1.5k
1
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2
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410
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Proteomics: package/statistics to compare very different LFQ-proteomes
dep proteomics limma
18 months ago Rob • 0
0
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0
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237
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Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq DNA-seq ATAC-seq proteomics microbiome Job
19 months ago lhuang7 ▴ 50
3
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0
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1.4k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
21 months ago • updated 19 months ago Gordon Smyth 43k
0
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318
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
19 months ago shepherl 2.8k
0
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355
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News: course - Protemics with R and Bioconductor - 17-19 February 2020 in Berlin
Bioconductor R Proteomics News
20 months ago info ▴ 10
0
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0
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160
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proteoQC throwing error after running
ProteoQC Proteomics
20 months ago laural710 • 0
0
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2
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397
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Total Area Sum Intensity based Normalization for label-free quantitative proteomics
normalization proteomics label-free
20 months ago amolares • 0
0
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3
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383
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Writing a loop through multiple fasta files and named files (is it possible with MSGFplus?)
MSGF+ Proteomics r
updated 21 months ago by 25k • written 21 months ago by • 0
0
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0
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168
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DEP package - Understanding the results table
dep proteomics logFC
21 months ago rina ▴ 20
0
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0
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249
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DEP: TMT analysis from MaxQuant output
DEP TMT proteomics
22 months ago dparrine • 0
2
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0
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1.6k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
22 months ago Laurent Gatto 1.5k
0
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0
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223
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News: Protemics with R and Bioconductor course in Berlin
R Proteomics News
22 months ago info ▴ 10
0
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0
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259
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
23 months ago tatabox • 0
0
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8
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1.2k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 23 months ago by • 0 • written 3.5 years ago by ▴ 20
3
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3
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407
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Clarification of results tables in DEP
DEP proteomics
updated 24 months ago by ▴ 70 • written 2.0 years ago by ▴ 480
1
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3
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374
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Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
Limma proteomics limma
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
2
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2
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314
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Where can I get functional bins for Arabidopsis thaliana genome (AGIs)
r proteomics RNA-Seq
updated 2.3 years ago by ▴ 180 • written 2.3 years ago by ▴ 10
0
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0
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262
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How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
2.3 years ago Wuschel ▴ 10
0
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2
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339
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Comparative proteome analysis of two different species
proteomics LC-MS/MS
updated 2.3 years ago by 1.5k • written 2.3 years ago by • 0
1
vote
0
replies
995
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Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
2.4 years ago • updated 2.3 years ago Laurent Gatto 1.5k
1
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2
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291
views
Errors installing "shinyTANDEM" package
software error proteomics
updated 2.4 years ago by 1.5k • written 2.4 years ago by • 0
1
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2
replies
683
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Errors installing mzR package
proteomics error
updated 2.4 years ago by 1.5k • written 2.4 years ago by • 0
1
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0
replies
757
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
2.4 years ago Laurent Gatto 1.5k
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to extract DEG from limmarResults object after beadarray analysis by Gordon Smyth 43k
I am the limma package author, but I don't know how to help you. The beadarray package has done a standard limma analysis but, instead of s…
Comment: An error using Diffbind plotprofile by doug.barrows • 0
Hi there, it's hard to tell how to debug without having the data. Could you potentially send me the object you are attempting to use for th…
Comment: DESeq2 Shrinkage methods for scRNA-Seq by Pedro Tan • 0
Thanks Michael! I will stick to apeglm and incorporate alternate size factors for single cell data. All the best, Pedro
Answer: Macbook M1 install genefilter failed by soda ▴ 10
i have solved this problem by myself. share with you. you need to download gfortran in path /opt/R/arm64/bin this website helped me: **h…
Comment: Best practice for quantifying sncRNA by James W. MacDonald 57k
If you used the QIASeq miRNA library, then you are wasting your time. That library adds the UMI barcodes and is intended for you to then up…
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Answer: Macbook M1 install genefilter failed
BioCAsia Virtual Meeting, 15-18 October 2020
Answer: Selecting pairs of exons from differentially spliced genes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
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