Bioconductor Rqc

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Rqc rbams rqc mmusculus scanbams

updated 2.7 years ago by ATpoint ★ 5.0k • written 2.7 years ago by Anushka • 0

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Rqc

updated 8.8 years ago by Welliton de Souza ▴ 70 • written 8.8 years ago by paucarrio ▴ 10

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limma Rqc beadarray Lumi

updated 9.7 years ago by Welliton de Souza ▴ 70 • written 9.7 years ago by raya.girish • 0

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Rqc

9.8 years ago • updated 9.7 years ago kritikamish99 ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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