Bioconductor Ruvnormalizedata

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RUVnormalizeData MicroarrayData limma

updated 10 months ago by Shaimaa Gamal • 0 • written 16 months ago by pg45863 ▴ 10

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

2.3 years ago Mohamed ▴ 30

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Comment: Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ? by rohitsatyam102 ▴ 20

I am facing a similar issue.

Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k

Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…

Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

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A: eBayes warning: zero sample variances

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