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Showing :
MicroarrayData
•
reset
0
votes
5
replies
236
views
Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData
MicroarrayData
limma
13 days ago • updated 12 days ago
pg45863
• 0
1
vote
2
replies
117
views
Error in getCdfInfo(object) :
MicroarrayData
7 weeks ago
kobra
• 0
0
votes
0
replies
190
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
3 months ago
jsharif
• 0
2
votes
1
reply
186
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData
Annotation
GEOdata
updated 3 months ago by
James W. MacDonald
63k • written 3 months ago by
Michele Claire
• 0
0
votes
1
reply
169
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 4 months ago by
James W. MacDonald
63k • written 4 months ago by
Aleksandra
• 0
0
votes
2
replies
284
views
Remove batch effect between microarray data
Microarray
DifferentialExpression
limma
MicroarrayData
removebatcheffect
4 months ago
dqt
• 0
2
votes
2
replies
253
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
7 months ago
evan.j.williams
▴ 10
0
votes
17
replies
1.1k
views
Advice for the analysis of microarray data with limma
Microarray
MicroarrayData
limma
updated 4 months ago by
Gordon Smyth
47k • written 7 months ago by
Sam
• 0
0
votes
1
reply
242
views
Finding negative control in the array using R
R
MicroarrayData
updated 9 months ago by
James W. MacDonald
63k • written 9 months ago by
Fatemeh
• 0
0
votes
0
replies
196
views
Filtering single-channel Affymetrix probes
filtering
probe
MicroarrayData
9 months ago
Fatemeh
• 0
2
votes
2
replies
488
views
the difference between getGEO and getGEOSuppFiles
MicroarrayData
9 months ago
Fatemeh
• 0
1
vote
1
reply
334
views
IS DGE possible with normalized microarray expression data and Limma ?
limma
MicroarrayData
updated 10 months ago by
James W. MacDonald
63k • written 10 months ago by
waltheja
• 0
0
votes
1
reply
364
views
Compare different cell lines with tissues using limma
limma
MicroarrayData
Microarray
Agilent
updated 11 months ago by
Gordon Smyth
47k • written 11 months ago by
Sam
• 0
0
votes
8
replies
836
views
Finding differentially expressed genes in a prospective cohort study
limma
MicroarrayData
Microarray
11 months ago
YC
• 0
1
vote
2
replies
456
views
Problem with results of Differential expression in Affymetrix microarray
limma
MicroarrayData
Microarray
Affymetrix
12 months ago
Mikołaj Mierzejewski
• 0
1
vote
2
replies
525
views
Affymetrix analysis of microarray by using Limma
limma
MicroarrayData
Microarray
Affymetrix
12 months ago
Mikołaj Mierzejewski
• 0
0
votes
2
replies
411
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db
MicroarrayData
Microarray
pd.clariom.d.human
13 months ago
amir.rakhimov.b
• 0
0
votes
2
replies
427
views
How to extract probe level intensity after rma() normalization
MicroarrayData
AffymetrixChip
updated 13 months ago by
James W. MacDonald
63k • written 13 months ago by
Haoran
• 0
0
votes
4
replies
550
views
getProbeInfo and exprs return two different dimensions
CELfile
MicroarrayData
AffymetrixChip
14 months ago
Haoran
• 0
0
votes
1
reply
588
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 18 months ago by
James W. MacDonald
63k • written 18 months ago by
biomyscience
• 0
0
votes
1
reply
448
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr
raw
Agilent
MicroarrayData
import
updated 19 months ago by
Gordon Smyth
47k • written 19 months ago by
irina.st.louis4
• 0
1
vote
3
replies
723
views
Microarray - Illumina Metadata
limma
GEO
MicroarrayData
affy
updated 20 months ago by
James W. MacDonald
63k • written 20 months ago by
RMP87
• 0
0
votes
2
replies
395
views
Adj. P-value identical and high for all the genes
MicroarrayData
20 months ago
Adriana
• 0
1
vote
1
reply
725
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray
GEOquery
cancerdata
MicroarrayData
updated 21 months ago by
James W. MacDonald
63k • written 21 months ago by
Caitlin
▴ 50
3
votes
5
replies
968
views
Use of arrayWeights with two treatment groups
Microarray
arrays
limma
MicroarrayData
updated 23 months ago by
Gordon Smyth
47k • written 24 months ago by
Emma
• 0
1
vote
1
reply
690
views
How do I adjust for other factors in Limma differential expression analysis?
limma
Microarray
MicroarrayData
arrays
updated 2.1 years ago by
Kevin Blighe
3.8k • written 2.1 years ago by
Emma
• 0
0
votes
2
replies
1.5k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD
pcaMethods
MicroarrayData
Microarray
2.1 years ago
waiyin0923
• 0
0
votes
2
replies
1.1k
views
WGCNA - Outliers after creating sample tree
MicroarrayData
WGCNA
Microarray
2.3 years ago
jpwl2
• 0
6
votes
4
replies
880
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
2.3 years ago
snijesh
▴ 20
3
votes
9
replies
1.0k
views
limma analysis when only Cy5 was used
MicroarrayData
limma
Microarray
2.3 years ago
Daniel.Schnell
• 0
30 results • Page
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Recent ...
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Comment: Ensembl plants at annotationHub?
by
Bruno
• 0
Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 3.6k
You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…
Comment: Query regarding phyloseq object construct with QIIME output
by
betterwound
• 0
Thanks for sharing the code [geometry dash](https://geometrydash.io/)
Answer: Ensembl plants at annotationHub?
by
Bruno
• 0
Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…
Comment: DESeq2 on multilevel design variable
by
swbarnes2
★ 1.2k
Did you relevel before or after calling DESeq?
Votes
Comment: Ensembl plants at annotationHub?
Answer: DESeq2 on multilevel design variable
Comment: Sudden error with KEGG analysis using gometh
Comment: Sudden error with KEGG analysis using gometh
Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i
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swbarnes2
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James W. MacDonald
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