Showing : MicroarrayData • reset
1
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
4 months ago Mj.A. • 0
5
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7
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653
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DEG Filtering
MicroarrayData limma Genefiltering
updated 4 months ago by 51k • written 4 months ago by • 0
2
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6
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762
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limma: vooma mean-variance trend and data filtration
MicroarrayData limma
4 months ago Lily Cheang ▴ 10
0
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3
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713
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Is it possible to extract the expression of a single group without making comparisons?
MicroarrayData hta20transcriptcluster.db
updated 11 months ago by 51k • written 11 months ago by • 0
5
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8
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1.7k
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Can the limma package be applied to Log2 RUV-normalized data?
RUVnormalizeData MicroarrayData limma
updated 7 months ago by • 0 • written 14 months ago by ▴ 10
1
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2
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877
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Error in getCdfInfo(object) :
MicroarrayData
15 months ago kobra • 0
0
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0
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709
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
17 months ago jsharif • 0
2
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1
reply
600
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 17 months ago by 66k • written 17 months ago by • 0
0
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1
reply
705
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 18 months ago by 66k • written 18 months ago by • 0
0
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2
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1.0k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
18 months ago dqt • 0
2
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2
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629
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
21 months ago evan.j.williams ▴ 10
0
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17
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2.6k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 18 months ago by 51k • written 21 months ago by • 0
0
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1
reply
577
views
Finding negative control in the array using R
R MicroarrayData
updated 23 months ago by 66k • written 23 months ago by • 0
0
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0
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578
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Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
23 months ago Fatemeh • 0
2
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2
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1.1k
views
the difference between getGEO and getGEOSuppFiles
MicroarrayData
23 months ago Fatemeh • 0
1
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1
reply
690
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IS DGE possible with normalized microarray expression data and Limma ?
limma MicroarrayData
updated 2.0 years ago by 66k • written 2.0 years ago by • 0
0
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1
reply
757
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.1 years ago by 51k • written 2.1 years ago by • 0
0
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8
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1.6k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.1 years ago YC • 0
1
vote
2
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896
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.1 years ago Mikołaj Mierzejewski • 0
1
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2
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1.2k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.1 years ago Mikołaj Mierzejewski • 0
0
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2
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861
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Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.2 years ago amir.rakhimov.b • 0
0
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2
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853
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How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.2 years ago by 66k • written 2.2 years ago by • 0
0
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4
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996
views
getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
2.3 years ago Haoran • 0
0
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1
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938
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 2.6 years ago by 66k • written 2.6 years ago by • 0
0
votes
1
reply
747
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.7 years ago by 51k • written 2.7 years ago by • 0
1
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3
replies
1.2k
views
Microarray - Illumina Metadata
limma GEO MicroarrayData affy
updated 2.8 years ago by 66k • written 2.8 years ago by • 0
0
votes
2
replies
688
views
Adj. P-value identical and high for all the genes
MicroarrayData
2.9 years ago Adriana • 0
1
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1
reply
1.3k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 2.9 years ago by 66k • written 2.9 years ago by ▴ 50
3
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5
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1.8k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.1 years ago by 51k • written 3.1 years ago by • 0
1
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1
reply
1.5k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by • 0
0
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2
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2.2k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.3 years ago waiyin0923 • 0
0
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2
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1.8k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.4 years ago jpwl2 • 0
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.5 years ago • updated 3.4 years ago snijesh ▴ 20
3
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9
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1.6k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.5 years ago Daniel.Schnell • 0
34 results • Page 1 of 1
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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