Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RUVnormalize
•
reset
1
vote
0
replies
415
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
10 months ago
Erdi
▴ 10
0
votes
0
replies
404
views
determine k during RUVSeq
RUVSeq
RUVnormalize
12 months ago
Ειρήνη
• 0
1
vote
2
replies
1.3k
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
2.1 years ago
AZ
▴ 30
0
votes
4
replies
3.3k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
2.9 years ago
Mohamed
▴ 30
0
votes
1
reply
788
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
6.6 years ago
losik
• 0
0
votes
2
replies
1.3k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 7.4 years ago by
Dario Strbenac
★ 1.6k • written 7.4 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
3.2k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 7.8 years ago by
davide risso
▴ 980 • written 7.8 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
3.0k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
7.8 years ago
Nik Tuzov
▴ 90
2
votes
1
reply
1.6k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 7.9 years ago by
davide risso
▴ 980 • written 7.9 years ago by
manish20072013
• 0
2
votes
1
reply
1.9k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.9 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.9k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
9.1 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.6k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
9.4 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.5k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 9.9 years ago by
laurent.jacob
▴ 10 • written 9.9 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.5k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.9 years ago by
laurent.jacob
▴ 10 • written 10.0 years ago by
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
Recent ...
Replies
Comment: Limma trend with limpa
by
Alejandro
• 0
Dear Gordon, Thank you very much!
Answer: DESeq2 from phyloseq error
by
asafpr
• 0
Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…
Answer: Limma trend with limpa
by
Gordon Smyth
52k
Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …
Comment: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
Awards
• All
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.1k
Popular Question
to
massimo
• 0
Popular Question
to
Gordon Smyth
52k
Popular Question
to
caroline.zanchi
▴ 10
Locations
• All
Denmark,
3 minutes ago
India,
8 minutes ago
United Kingdom,
27 minutes ago
Germany,
36 minutes ago
Israel,
57 minutes ago
Traffic: 1038 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6