Bioconductor RUVnormalize

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RUVSeq RUVnormalize

10 months ago Erdi ▴ 10

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404

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RUVSeq RUVnormalize

12 months ago Ειρήνη • 0

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

2.1 years ago AZ ▴ 30

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

2.9 years ago Mohamed ▴ 30

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788

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RUVnormalize protein mi

6.6 years ago losik • 0

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1.3k

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RUVnormalize limma corrected expression matrix microarray

updated 7.4 years ago by Dario Strbenac ★ 1.6k • written 7.4 years ago by massimo.acquaviva.78 • 0

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 7.8 years ago by davide risso ▴ 980 • written 7.8 years ago by Nik Tuzov ▴ 90

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RUV ruvseq ruvr ruvnormalize single cell

7.8 years ago Nik Tuzov ▴ 90

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1.6k

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edger ruvseq rnaseq normalization ruvnormalize

updated 7.9 years ago by davide risso ▴ 980 • written 7.9 years ago by manish20072013 • 0

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1.9k

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ruvseq RUV ruvnormalize ruvg

8.9 years ago anthonycolombo60 • 0

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1.9k

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normalization ruvseq ruvnormalize ruvs eda

9.1 years ago thomas.wolfe • 0

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1.6k

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rnaseq ruvnormalize normalization technical replicates

9.4 years ago thomas.wolfe • 0

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1.5k

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ruvnormalize microarray normalization

updated 9.9 years ago by laurent.jacob ▴ 10 • written 9.9 years ago by Cornwell, Adam ▴ 110

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1.5k

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RUVNormalize Subsetting

updated 9.9 years ago by laurent.jacob ▴ 10 • written 10.0 years ago by Dario Strbenac ★ 1.6k

14 results • Page 1 of 1

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Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…

Answer: Limma trend with limpa by Gordon Smyth 52k

Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …

Comment: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Popular Question to James W. MacDonald 68k