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aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML

updated 20.2 years ago by Norman Pavelka ▴ 190 • written 20.2 years ago by Seth Falcon ★ 7.4k

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SAGElyzer Rdbi RdbiPgSQL AnnBuilder SAGElyzer Rdbi RdbiPgSQL AnnBuilder

updated 22.0 years ago by rgentleman ★ 5.5k • written 22.0 years ago by Bronwyn Carlisle ▴ 10

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Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer

updated 22.2 years ago by Douglas Bates ▴ 180 • written 22.2 years ago by Baker, Stephen ▴ 160

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SAGElyzer Rdbi SAGElyzer Rdbi

updated 22.2 years ago by John Zhang ★ 2.9k • written 22.2 years ago by Kasper Daniel Hansen ▴ 630

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SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer

22.9 years ago • updated 22.8 years ago madman@jimmy.harvard.edu ▴ 850

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180